Literature DB >> 10592237

The IMB Jena Image Library of biological macromolecules.

J Reichert1, A Jabs, P Slickers, J Sühnel.   

Abstract

The IMB Jena Image Library of Biological Macro-molecules (http://www. imb-jena.de/IMAGE.html ) is aimed at a better dissemination of information on three-dimensional biopolymer structures with an emphasis on visualization and analysis. It provides access to all structure entries deposited at the Protein Data Bank (PDB) and Nucleic Acid Database (NDB). By combining automatic and manual processing it is possible to keep pace with the rapidly growing number of known biopolymer structures and to provide, for selected entries, information not available from automatic procedures. Each entry page contains basic information on the structure, various visualization and analysis tools as well as links to other databases. The visualization techniques adopted include static mono/stereo raster or vector graphics representations, virtual reality modeling (VRML), RasMol/Chime scripts and Java applets. A helix and bending analysis tool provides consistent information on about 750 DNA and RNA duplex structures. Access to metal-containing PDB entries is possible via the Periodic Table of Elements. Finally, general information on amino acids, cis -peptide bonds, structural elements in proteins, base pairs, nucleic acid model conformations and experimental methods for biopolymer structure determination is provided.

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Year:  2000        PMID: 10592237      PMCID: PMC102466          DOI: 10.1093/nar/28.1.246

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  22 in total

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Authors:  H M Berman; W K Olson; D L Beveridge; J Westbrook; A Gelbin; T Demeny; S H Hsieh; A R Srinivasan; B Schneider
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2.  The CATH Database provides insights into protein structure/function relationships.

Authors:  C A Orengo; F M Pearl; J E Bray; A E Todd; A C Martin; L Lo Conte; J M Thornton
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

3.  Virtual reality modeling language in chemistry.

Authors:  H Vollhardt; C Henn; G Moeckel; M Teschner; J Brickmann
Journal:  J Mol Graph       Date:  1995-12

4.  Non-proline cis peptide bonds in proteins.

Authors:  A Jabs; M S Weiss; R Hilgenfeld
Journal:  J Mol Biol       Date:  1999-02-12       Impact factor: 5.469

5.  MOLMOL: a program for display and analysis of macromolecular structures.

Authors:  R Koradi; M Billeter; K Wüthrich
Journal:  J Mol Graph       Date:  1996-02

6.  Image library of biological macromolecules.

Authors:  J Sühnel
Journal:  Comput Appl Biosci       Date:  1996-06

7.  The Protein Data Bank: a computer-based archival file for macromolecular structures.

Authors:  F C Bernstein; T F Koetzle; G J Williams; E F Meyer; M D Brice; J R Rodgers; O Kennard; T Shimanouchi; M Tasumi
Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

8.  RASMOL: biomolecular graphics for all.

Authors:  R A Sayle; E J Milner-White
Journal:  Trends Biochem Sci       Date:  1995-09       Impact factor: 13.807

9.  The Swiss-3DImage collection and PDB-Browser on the World-Wide Web.

Authors:  M C Peitsch; T N Wells; D R Stampf; J L Sussman
Journal:  Trends Biochem Sci       Date:  1995-02       Impact factor: 13.807

10.  SETOR: hardware-lighted three-dimensional solid model representations of macromolecules.

Authors:  S V Evans
Journal:  J Mol Graph       Date:  1993-06
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  5 in total

1.  MDB: the Metalloprotein Database and Browser at The Scripps Research Institute.

Authors:  Jesus M Castagnetto; Sean W Hennessy; Victoria A Roberts; Elizabeth D Getzoff; John A Tainer; Michael E Pique
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

2.  The IMB Jena Image Library of Biological Macromolecules: 2002 update.

Authors:  Jan Reichert; Jürgen Sühnel
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  RNABase: an annotated database of RNA structures.

Authors:  Venkatesh L Murthy; George D Rose
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

4.  AISMIG--an interactive server-side molecule image generator.

Authors:  Andreas Bohne-Lang; Wolf-Dieter Groch; René Ranzinger
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

5.  ECDomainMiner: discovering hidden associations between enzyme commission numbers and Pfam domains.

Authors:  Seyed Ziaeddin Alborzi; Marie-Dominique Devignes; David W Ritchie
Journal:  BMC Bioinformatics       Date:  2017-02-13       Impact factor: 3.169

  5 in total

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