Literature DB >> 7071593

The anatomy of A-, B-, and Z-DNA.

R E Dickerson, H R Drew, B N Conner, R M Wing, A V Fratini, M L Kopka.   

Abstract

Recent advances in DNA synthesis methods have made it possible to carry out single-crystal x-ray analyses of double-stranded DNA molecules of predetermined sequence, with 4 to 12 base pairs. At least one example has been examined from each of the three known families of DNA helix: A, B, and Z. Each family has its own intrinsic restrictions on chain folding and structure. The observed solvent positions in these crystal structures have confirmed earlier fiber and solution measurements, and have led to proposals explaining the transitions from B to A and from B to Z helices. Prospects are improving for an understanding of the mode of bending of DNA in chromatin, and the way in which specific DNA sequences are recognized by drug molecules and repressor proteins.

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Year:  1982        PMID: 7071593     DOI: 10.1126/science.7071593

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  118 in total

1.  Intrinsic conformational energetics associated with the glycosyl torsion in DNA: a quantum mechanical study.

Authors:  Nicolas Foloppe; Brigitte Hartmann; Lennart Nilsson; Alexander D MacKerell
Journal:  Biophys J       Date:  2002-03       Impact factor: 4.033

2.  Altered structural fluctuations in duplex RNA versus DNA: a conformational switch involving base pair opening.

Authors:  Yongping Pan; Alexander D MacKerell
Journal:  Nucleic Acids Res       Date:  2003-12-15       Impact factor: 16.971

Review 3.  Unusual DNA duplex and hairpin motifs.

Authors:  Shan-Ho Chou; Ko-Hsin Chin; Andrew H-J Wang
Journal:  Nucleic Acids Res       Date:  2003-05-15       Impact factor: 16.971

4.  The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids.

Authors:  H M Berman; W K Olson; D L Beveridge; J Westbrook; A Gelbin; T Demeny; S H Hsieh; A R Srinivasan; B Schneider
Journal:  Biophys J       Date:  1992-09       Impact factor: 4.033

5.  Evaluation of DNA Force Fields in Implicit Solvation.

Authors:  Thomas Gaillard; David A Case
Journal:  J Chem Theory Comput       Date:  2011-10-11       Impact factor: 6.006

6.  Evidence for a new Z-type left-handed DNA helix: properties of Z(WC)-DNA.

Authors:  A T Ansevin; A H Wang
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

7.  Charge state of the globular histone core controls stability of the nucleosome.

Authors:  Andrew T Fenley; David A Adams; Alexey V Onufriev
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

8.  Structure-specific nuclease activities of Pyrococcus abyssi RNase HII.

Authors:  Sébastien Le Laz; Audrey Le Goaziou; Ghislaine Henneke
Journal:  J Bacteriol       Date:  2010-05-14       Impact factor: 3.490

9.  The effect on quadruplex stability of North-nucleoside derivatives in the loops of the thrombin-binding aptamer.

Authors:  Anna Aviñó; Stefania Mazzini; Ruben Ferreira; Raimundo Gargallo; Victor E Marquez; Ramon Eritja
Journal:  Bioorg Med Chem       Date:  2012-06-09       Impact factor: 3.641

10.  Structural analysis of the binding modes of minor groove ligands comprised of disubstituted benzenes.

Authors:  C A Hawkins; C Watson; Y Yan; B Gong; D E Wemmer
Journal:  Nucleic Acids Res       Date:  2001-02-15       Impact factor: 16.971

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