Literature DB >> 1304917

Multiple alanine replacements within alpha-helix 126-134 of T4 lysozyme have independent, additive effects on both structure and stability.

X J Zhang1, W A Baase, B W Matthews.   

Abstract

In a systematic attempt to identify residues important in the folding and stability of T4 lysozyme, five amino acids within alpha-helix 126-134 were substituted by alanine, either singly or in selected combinations. Together with three alanines already present in the wild-type structure this provided a set of mutant proteins with up to eight alanines in sequence. All the variants behaved normally, suggesting that the majority of residues in the alpha-helix are nonessential for the folding of T4 lysozyme. Of the five individual alanine substitutions it is inferred that four result in slightly increased protein stability and one, the replacement of a buried leucine with alanine, substantially decreased stability. The results support the idea that alanine is a residue of high helix propensity. The change in protein stability observed for each of the multiple mutants is approximately equal to the sum of the energies associated with each of the constituent substitutions. All of the variants could be crystallized isomorphously with wild-type lysozyme, and, with one trivial exception, their structures were determined at high resolution. Substitution of the largely solvent-exposed residues Asp 127, Glu 128, and Val 131 with alanine caused essentially no change in structure except at the immediate site of replacement. Substitutions of the partially buried Asn 132 and the buried Leu 133 with alanine were associated with modest (< or = 0.4 A) structural adjustments. The structural changes seen in the multiple mutants were essentially a combination of those seen in the constituent single replacements. The different replacements therefore act essentially independently not only so far as changes in energy are concerned but also in their effect on structure. The destabilizing replacement Leu 133-->Ala made alpha-helix 126-134 somewhat less regular. Incorporation of additional alanine replacements tended to make the helix more uniform. For the penta-alanine variant a distinct change occurred in a crystal-packing contact, and the "hinge-bending angle" between the amino- and carboxy-terminal domains changed by 3.6 degrees. This tends to confirm that such hinge-bending in T4 lysozyme is a low-energy conformational change.

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Year:  1992        PMID: 1304917      PMCID: PMC2142239          DOI: 10.1002/pro.5560010608

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  23 in total

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Authors:  G Merutka; W Lipton; W Shalongo; S H Park; E Stellwagen
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Authors:  K T O'Neil; W F DeGrado
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4.  Helix geometry in proteins.

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5.  Structure of bacteriophage T4 lysozyme refined at 1.7 A resolution.

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Review 6.  Hydrogen bonding in globular proteins.

Authors:  E N Baker; R E Hubbard
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7.  Amino acid substitutions far from the active site of bacteriophage T4 lysozyme reduce catalytic activity and suggest that the C-terminal lobe of the enzyme participates in substrate binding.

Authors:  M G Grütter; B W Matthews
Journal:  J Mol Biol       Date:  1982-01-25       Impact factor: 5.469

8.  Comparison of the crystal structure of bacteriophage T4 lysozyme at low, medium, and high ionic strengths.

Authors:  J A Bell; K P Wilson; X J Zhang; H R Faber; H Nicholson; B W Matthews
Journal:  Proteins       Date:  1991

9.  Structural and thermodynamic analysis of the packing of two alpha-helices in bacteriophage T4 lysozyme.

Authors:  S Daopin; T Alber; W A Baase; J A Wozniak; B W Matthews
Journal:  J Mol Biol       Date:  1991-09-20       Impact factor: 5.469

10.  Second-site revertants of an inactive T4 lysozyme mutant restore activity by restructuring the active site cleft.

Authors:  A R Poteete; D P Sun; H Nicholson; B W Matthews
Journal:  Biochemistry       Date:  1991-02-05       Impact factor: 3.162

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  11 in total

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Review 3.  Lessons from the lysozyme of phage T4.

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Journal:  Protein Sci       Date:  2010-04       Impact factor: 6.725

4.  Rescue of abasic hammerhead ribozymes by exogenous addition of specific bases.

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6.  Conservation of solvent-binding sites in 10 crystal forms of T4 lysozyme.

Authors:  X J Zhang; B W Matthews
Journal:  Protein Sci       Date:  1994-07       Impact factor: 6.725

7.  One-Pot Biosynthesis of l-Aspartate from Maleate via an Engineered Strain Containing a Dual-Enzyme System.

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9.  Potential drug-like inhibitors of Group 1 influenza neuraminidase identified through computer-aided drug design.

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10.  Alanine-scanning mutagenesis of the beta-sheet region of phage T4 lysozyme suggests that tertiary context has a dominant effect on beta-sheet formation.

Authors:  Molly M He; Zachary A Wood; Walter A Baase; Hong Xiao; Brian W Matthews
Journal:  Protein Sci       Date:  2004-08-31       Impact factor: 6.725

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