Literature DB >> 2062826

Comparison of the crystal structure of bacteriophage T4 lysozyme at low, medium, and high ionic strengths.

J A Bell1, K P Wilson, X J Zhang, H R Faber, H Nicholson, B W Matthews.   

Abstract

Crystals of bacteriophage T4 lysozyme used for structural studies are routinely grown from concentrated phosphate solutions. It has been found that crystals in the same space group can also be grown from solutions containing 0.05 M imidazole chloride, 0.4 M sodium choride, and 30% polyethylene glycol 3500. These crystals, in addition, can also be equilibrated with a similar mother liquor in which the sodium chloride concentration is reduced to 0.025 M. The availability of these three crystal variants has permitted the structure of T4 lysozyme to be compared at low, medium, and high ionic strength. At the same time the X-ray structure of phage T4 lysozyme crystallized from phosphate solutions has been further refined against a new and improved X-ray diffraction data set. The structures of T4 lysozyme in the crystals grown with polyethylene glycol as a precipitant, regardless of the sodium chloride concentration, were very similar to the structure in crystals grown from concentrated phosphate solutions. The main differences are related to the formation of mixed disulfides between cysteine residues 54 and 97 and 2-mercaptoethanol, rather than to the differences in the salt concentration in the crystal mother liquor. Formation of the mixed disulfide at residue 54 resulted in the displacement of Arg-52 and the disruption of the salt bridge between this residue and Glu-62. Other than this change, no obvious alterations in existing salt bridges in T4 lysozyme were observed. Neither did the reduction in the ionic strength of the mother liquor result in the formation of new salt bridge interactions. These results are consistent with the ideas that a crystal structure determined at high salt concentrations is a good representation of the structure at lower ionic strengths, and that models of electrostatic interactions in proteins that are based on crystal structures determined at high salt concentrations are likely to be relevant at physiological ionic strengths.

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Year:  1991        PMID: 2062826     DOI: 10.1002/prot.340100103

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  18 in total

1.  Structure of a stabilizing disulfide bridge mutant that closes the active-site cleft of T4 lysozyme.

Authors:  R H Jacobson; M Matsumura; H R Faber; B W Matthews
Journal:  Protein Sci       Date:  1992-01       Impact factor: 6.725

2.  Automatic recognition of hydrophobic clusters and their correlation with protein folding units.

Authors:  M H Zehfus
Journal:  Protein Sci       Date:  1995-06       Impact factor: 6.725

3.  Thermodynamic effects of mutations on the denaturation of T4 lysozyme.

Authors:  J H Carra; E C Murphy; P L Privalov
Journal:  Biophys J       Date:  1996-10       Impact factor: 4.033

4.  Regulation of a muralytic enzyme by dynamic membrane topology.

Authors:  Qingan Sun; Gabriel F Kuty; Arulandu Arockiasamy; Min Xu; Ry Young; James C Sacchettini
Journal:  Nat Struct Mol Biol       Date:  2009-11-01       Impact factor: 15.369

5.  The role of adjuvant in mediating antigen structure and stability.

Authors:  Latoya Jones Braun; Aimee M Eldridge; Jessica Cummiskey; Kelly K Arthur; Deborah S Wuttke
Journal:  J Pharm Sci       Date:  2011-12-28       Impact factor: 3.534

Review 6.  Bacteriophage T4 genome.

Authors:  Eric S Miller; Elizabeth Kutter; Gisela Mosig; Fumio Arisaka; Takashi Kunisawa; Wolfgang Rüger
Journal:  Microbiol Mol Biol Rev       Date:  2003-03       Impact factor: 11.056

7.  Conservation of solvent-binding sites in 10 crystal forms of T4 lysozyme.

Authors:  X J Zhang; B W Matthews
Journal:  Protein Sci       Date:  1994-07       Impact factor: 6.725

8.  Structural and thermodynamic characterization of T4 lysozyme mutants and the contribution of internal cavities to pressure denaturation.

Authors:  Nozomi Ando; Buz Barstow; Walter A Baase; Andrew Fields; Brian W Matthews; Sol M Gruner
Journal:  Biochemistry       Date:  2008-09-25       Impact factor: 3.162

9.  Contributions of all 20 amino acids at site 96 to the stability and structure of T4 lysozyme.

Authors:  Blaine H M Mooers; Walter A Baase; Jonathan W Wray; Brian W Matthews
Journal:  Protein Sci       Date:  2009-05       Impact factor: 6.725

10.  Evaluation at atomic resolution of the role of strain in destabilizing the temperature-sensitive T4 lysozyme mutant Arg 96 --> His.

Authors:  Blaine H M Mooers; Dale E Tronrud; Brian W Matthews
Journal:  Protein Sci       Date:  2009-05       Impact factor: 6.725

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