Literature DB >> 12960211

Array painting: a method for the rapid analysis of aberrant chromosomes using DNA microarrays.

H Fiegler1, S M Gribble, D C Burford, P Carr, E Prigmore, K M Porter, S Clegg, J A Crolla, N R Dennis, P Jacobs, N P Carter.   

Abstract

OBJECTIVE: The authors describe a method, termed array painting, which allows the rapid, high resolution analysis of the content and breakpoints of aberrant chromosomes.
METHODS: Array painting is similar in concept to reverse chromosome painting and involves the hybridisation of probes generated by PCR of small numbers of flow sorted chromosomes on large insert genomic clone DNA microarrays.
RESULTS: and
CONCLUSIONS: By analysing patients with cytogenetically balanced chromosome rearrangements, the authors show the effectiveness of array painting as a method to map breakpoints prior to cloning and sequencing chromosome rearrangements.

Entities:  

Mesh:

Year:  2003        PMID: 12960211      PMCID: PMC1735585          DOI: 10.1136/jmg.40.9.664

Source DB:  PubMed          Journal:  J Med Genet        ISSN: 0022-2593            Impact factor:   6.318


  7 in total

1.  DNA microarrays for comparative genomic hybridization based on DOP-PCR amplification of BAC and PAC clones.

Authors:  Heike Fiegler; Philippa Carr; Eleanor J Douglas; Deborah C Burford; Sarah Hunt; Carol E Scott; James Smith; David Vetrie; Patricia Gorman; Ian P M Tomlinson; Nigel P Carter
Journal:  Genes Chromosomes Cancer       Date:  2003-04       Impact factor: 5.006

2.  Reverse chromosome painting: a method for the rapid analysis of aberrant chromosomes in clinical cytogenetics.

Authors:  N P Carter; M A Ferguson-Smith; M T Perryman; H Telenius; A H Pelmear; M A Leversha; M T Glancy; S L Wood; K Cook; H M Dyson
Journal:  J Med Genet       Date:  1992-05       Impact factor: 6.318

3.  Bivariate chromosome analysis using a commercial flow cytometer.

Authors:  N P Carter
Journal:  Methods Mol Biol       Date:  1994

4.  Matrix-based comparative genomic hybridization: biochips to screen for genomic imbalances.

Authors:  S Solinas-Toldo; S Lampel; S Stilgenbauer; J Nickolenko; A Benner; H Döhner; T Cremer; P Lichter
Journal:  Genes Chromosomes Cancer       Date:  1997-12       Impact factor: 5.006

5.  Genome-wide detection of chromosomal imbalances in tumors using BAC microarrays.

Authors:  Wei-Wen Cai; Jian-Hua Mao; Chi-Wen Chow; Shamsha Damani; Allan Balmain; Allan Bradley
Journal:  Nat Biotechnol       Date:  2002-04       Impact factor: 54.908

6.  A candidate gene for congenital bilateral isolated ptosis identified by molecular analysis of a de novo balanced translocation.

Authors:  Tristan W McMullan; John A Crolla; Simon G Gregory; Nigel P Carter; Rachel A Cooper; Gareth R Howell; David O Robinson
Journal:  Hum Genet       Date:  2002-02-01       Impact factor: 4.132

7.  High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays.

Authors:  D Pinkel; R Segraves; D Sudar; S Clark; I Poole; D Kowbel; C Collins; W L Kuo; C Chen; Y Zhai; S H Dairkee; B M Ljung; J W Gray; D G Albertson
Journal:  Nat Genet       Date:  1998-10       Impact factor: 38.330

  7 in total
  33 in total

1.  Applications of combined DNA microarray and chromosome sorting technologies.

Authors:  S M Gribble; H Fiegler; D C Burford; E Prigmore; F Yang; P Carr; B L Ng; T Sun; E S Kamberov; V L Makarov; J P Langmore; N P Carter
Journal:  Chromosome Res       Date:  2004       Impact factor: 5.239

Review 2.  Multicolor chromosome painting in diagnostic and research applications.

Authors:  Sabine Langer; Jürgen Kraus; Isabell Jentsch; Michael R Speicher
Journal:  Chromosome Res       Date:  2004       Impact factor: 5.239

3.  Ultra-high resolution array painting facilitates breakpoint sequencing.

Authors:  S M Gribble; D Kalaitzopoulos; D C Burford; E Prigmore; R R Selzer; B L Ng; N S W Matthews; K M Porter; R Curley; S J Lindsay; J Baptista; T A Richmond; N P Carter
Journal:  J Med Genet       Date:  2006-09-13       Impact factor: 6.318

4.  The complex nature of constitutional de novo apparently balanced translocations in patients presenting with abnormal phenotypes.

Authors:  S M Gribble; E Prigmore; D C Burford; K M Porter; Bee Ling Ng; E J Douglas; H Fiegler; P Carr; D Kalaitzopoulos; S Clegg; R Sandstrom; I K Temple; S A Youings; N S Thomas; N R Dennis; P A Jacobs; J A Crolla; N P Carter
Journal:  J Med Genet       Date:  2005-01       Impact factor: 6.318

5.  Prenatal detection of unbalanced chromosomal rearrangements by array CGH.

Authors:  L Rickman; H Fiegler; C Shaw-Smith; R Nash; V Cirigliano; G Voglino; B L Ng; C Scott; J Whittaker; M Adinolfi; N P Carter; M Bobrow
Journal:  J Med Genet       Date:  2005-09-30       Impact factor: 6.318

6.  Micro-array analyses decipher exceptional complex familial chromosomal rearrangement.

Authors:  Christine Fauth; Susan M Gribble; Keith M Porter; Montserrat Codina-Pascual; Bee Ling Ng; Jürgen Kraus; Sabine Uhrig; Jürgen Leifheit; Thomas Haaf; Heike Fiegler; Nigel P Carter; Michael R Speicher
Journal:  Hum Genet       Date:  2006-01-03       Impact factor: 4.132

7.  Characterization of a 3;6 translocation associated with renal cell carcinoma.

Authors:  Rebecca E Foster; Mahera Abdulrahman; Mark R Morris; Elena Prigmore; Susan Gribble; Beeling Ng; Dean Gentle; Steven Ready; Phil M T Weston; Michael S Wiesener; Takeshi Kishida; Masahiro Yao; Val Davison; Jose Luis Barbero; Carol Chu; Nigel P Carter; Farida Latif; Eamonn R Maher
Journal:  Genes Chromosomes Cancer       Date:  2007-04       Impact factor: 5.006

8.  Breakpoint mapping and array CGH in translocations: comparison of a phenotypically normal and an abnormal cohort.

Authors:  Julia Baptista; Catherine Mercer; Elena Prigmore; Susan M Gribble; Nigel P Carter; Viv Maloney; N Simon Thomas; Patricia A Jacobs; John A Crolla
Journal:  Am J Hum Genet       Date:  2008-03-27       Impact factor: 11.025

9.  Breakpoint analysis of balanced chromosome rearrangements by next-generation paired-end sequencing.

Authors:  Wei Chen; Reinhard Ullmann; Claudia Langnick; Corinna Menzel; Zofia Wotschofsky; Hao Hu; Andreas Döring; Yuhui Hu; Hui Kang; Andreas Tzschach; Maria Hoeltzenbein; Heidemarie Neitzel; Susanne Markus; Eberhard Wiedersberg; Gerd Kistner; Conny M A van Ravenswaaij-Arts; Tjitske Kleefstra; Vera M Kalscheuer; Hans-Hilger Ropers
Journal:  Eur J Hum Genet       Date:  2009-12-02       Impact factor: 4.246

10.  High-resolution identification of balanced and complex chromosomal rearrangements by 4C technology.

Authors:  Marieke Simonis; Petra Klous; Irene Homminga; Robert-Jan Galjaard; Erik-Jan Rijkers; Frank Grosveld; Jules P P Meijerink; Wouter de Laat
Journal:  Nat Methods       Date:  2009-10-11       Impact factor: 28.547

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