Literature DB >> 12897858

Communication over a large distance: enhancers and insulators.

Vladimir A Bondarenko1, Ye V Liu, Yong I Jiang, Vasily M Studitsky.   

Abstract

Enhancers are regulatory DNA sequences that can work over a large distance. Efficient enhancer action over a distance clearly requires special mechanisms for facilitating communication between the enhancer and its target. While the chromatin looping model can explain the majority of the observations, some recent experimental findings suggest that a chromatin scanning mechanism is used to establish the loop. These new findings help to understand the mechanism of action of the elements that can prevent enhancer-promoter communication (insulators).

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Year:  2003        PMID: 12897858     DOI: 10.1139/o03-051

Source DB:  PubMed          Journal:  Biochem Cell Biol        ISSN: 0829-8211            Impact factor:   3.626


  30 in total

1.  Theoretical analysis of the role of chromatin interactions in long-range action of enhancers and insulators.

Authors:  Swagatam Mukhopadhyay; Paul Schedl; Vasily M Studitsky; Anirvan M Sengupta
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-28       Impact factor: 11.205

2.  Internucleosomal interactions mediated by histone tails allow distant communication in chromatin.

Authors:  Olga I Kulaeva; Guohui Zheng; Yury S Polikanov; Andrew V Colasanti; Nicolas Clauvelin; Swagatam Mukhopadhyay; Anirvan M Sengupta; Vasily M Studitsky; Wilma K Olson
Journal:  J Biol Chem       Date:  2012-04-19       Impact factor: 5.157

Review 3.  Enhancer-promoter interference and its prevention in transgenic plants.

Authors:  Stacy D Singer; Kerik D Cox; Zongrang Liu
Journal:  Plant Cell Rep       Date:  2010-12-19       Impact factor: 4.570

4.  The Mcp element from the bithorax complex contains an insulator that is capable of pairwise interactions and can facilitate enhancer-promoter communication.

Authors:  Natalia Gruzdeva; Olga Kyrchanova; Alexander Parshikov; Andrey Kullyev; Pavel Georgiev
Journal:  Mol Cell Biol       Date:  2005-05       Impact factor: 4.272

5.  Study of long-distance functional interactions between Su(Hw) insulators that can regulate enhancer-promoter communication in Drosophila melanogaster.

Authors:  Ekaterina Savitskaya; Larisa Melnikova; Margarita Kostuchenko; Elena Kravchenko; Ekaterina Pomerantseva; Tatiana Boikova; Darya Chetverina; Aleksander Parshikov; Polyna Zobacheva; Elena Gracheva; Alexander Galkin; Pavel Georgiev
Journal:  Mol Cell Biol       Date:  2006-02       Impact factor: 4.272

6.  Chromatin structure can strongly facilitate enhancer action over a distance.

Authors:  Mikhail A Rubtsov; Yury S Polikanov; Vladimir A Bondarenko; Yuh-Hwa Wang; Vasily M Studitsky
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-13       Impact factor: 11.205

Review 7.  Biochemical analysis of enhancer-promoter communication in chromatin.

Authors:  Yury S Polikanov; Mikhail A Rubtsov; Vasily M Studitsky
Journal:  Methods       Date:  2007-03       Impact factor: 3.608

8.  Drosophila gypsy insulator and yellow enhancers regulate activity of yellow promoter through the same regulatory element.

Authors:  Larisa Melnikova; Margarita Kostuchenko; Margarita Silicheva; Pavel Georgiev
Journal:  Chromosoma       Date:  2007-11-10       Impact factor: 4.316

9.  Probability of the site juxtaposition determines the rate of protein-mediated DNA looping.

Authors:  Yury S Polikanov; Vladimir A Bondarenko; Vladimir Tchernaenko; Yong I Jiang; Leonard C Lutter; Alexander Vologodskii; Vasily M Studitsky
Journal:  Biophys J       Date:  2007-06-15       Impact factor: 4.033

10.  Maps of cis-Regulatory Nodes in Megabase Long Genome Segments are an Inevitable Intermediate Step Toward Whole Genome Functional Mapping.

Authors:  Lev G Nikolaev; Sergey B Akopov; Igor P Chernov; Eugene D Sverdlov
Journal:  Curr Genomics       Date:  2007-04       Impact factor: 2.236

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