Literature DB >> 17994318

Drosophila gypsy insulator and yellow enhancers regulate activity of yellow promoter through the same regulatory element.

Larisa Melnikova1, Margarita Kostuchenko, Margarita Silicheva, Pavel Georgiev.   

Abstract

There is ample evidence that the enhancers of a promoterless yellow locus in one homologous chromosome can activate the yellow promoter in the other chromosome where the enhancers are inactive or deleted, which is indicative of a high specificity of the enhancer-promoter interaction in yellow. In this paper, we have found that the yellow sequence from -100 to -69 is essential for stimulation of the heterologous eve (TATA-containing) and white (TATA-less) promoters by the yellow enhancers from a distance. However, the presence of this sequence is not required when the yellow enhancers are directly fused to the heterologous promoters or are activated by the yeast GAL4 activator. Unexpectedly, the same promoter proximal region defines previously described promoter-specific, long-distance repression of the yellow promoter by the gypsy insulator on the mod(mdg4) ( u1 ) background. These finding suggest that proteins bound to the -100 to -69 sequence are essential for communication between the yellow promoter and upstream regulatory elements.

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Year:  2007        PMID: 17994318     DOI: 10.1007/s00412-007-0132-6

Source DB:  PubMed          Journal:  Chromosoma        ISSN: 0009-5915            Impact factor:   4.316


  70 in total

1.  GAGA can mediate enhancer function in trans by linking two separate DNA molecules.

Authors:  Tokameh Mahmoudi; Katerina R Katsani; C Peter Verrijzer
Journal:  EMBO J       Date:  2002-04-02       Impact factor: 11.598

Review 2.  Transvection in Drosophila.

Authors:  James A Kennison; Jeffrey W Southworth
Journal:  Adv Genet       Date:  2002       Impact factor: 1.944

3.  Looping and interaction between hypersensitive sites in the active beta-globin locus.

Authors:  Bas Tolhuis; Robert Jan Palstra; Erik Splinter; Frank Grosveld; Wouter de Laat
Journal:  Mol Cell       Date:  2002-12       Impact factor: 17.970

4.  New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB.

Authors:  T Lagrange; A N Kapanidis; H Tang; D Reinberg; R H Ebright
Journal:  Genes Dev       Date:  1998-01-01       Impact factor: 11.361

5.  Insulation of enhancer-promoter communication by a gypsy transposon insert in the Drosophila cut gene: cooperation between suppressor of hairy-wing and modifier of mdg4 proteins.

Authors:  M Gause; P Morcillo; D Dorsett
Journal:  Mol Cell Biol       Date:  2001-07       Impact factor: 4.272

6.  Loss of insulator activity by paired Su(Hw) chromatin insulators.

Authors:  E Muravyova; A Golovnin; E Gracheva; A Parshikov; T Belenkaya; V Pirrotta; P Georgiev
Journal:  Science       Date:  2001-01-19       Impact factor: 47.728

7.  Transposition of cloned P elements into Drosophila germ line chromosomes.

Authors:  A C Spradling; G M Rubin
Journal:  Science       Date:  1982-10-22       Impact factor: 47.728

8.  Promoter specificity mediates the independent regulation of neighboring genes.

Authors:  C Merli; D E Bergstrom; J A Cygan; R K Blackman
Journal:  Genes Dev       Date:  1996-05-15       Impact factor: 11.361

9.  Fab-7 functions as a chromatin domain boundary to ensure proper segment specification by the Drosophila bithorax complex.

Authors:  K Hagstrom; M Muller; P Schedl
Journal:  Genes Dev       Date:  1996-12-15       Impact factor: 11.361

10.  DNA looping induced by a transcriptional enhancer in vivo.

Authors:  Michael Petrascheck; Dominik Escher; Tokameh Mahmoudi; C Peter Verrijzer; Walter Schaffner; Alcide Barberis
Journal:  Nucleic Acids Res       Date:  2005-07-07       Impact factor: 16.971

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  12 in total

1.  The Role of GC-Rich Sequences from the Promoter Region of the Drosophila melanogaster yellow Gene in the Enhancer- Dependent Activation of Transcription.

Authors:  M V Kostyuchenko; A K Golovnin; P G Georgiev; L S Melnikova
Journal:  Dokl Biochem Biophys       Date:  2018-11-05       Impact factor: 0.788

Review 2.  Functional and mechanistic diversity of distal transcription enhancers.

Authors:  Michael Bulger; Mark Groudine
Journal:  Cell       Date:  2011-02-04       Impact factor: 41.582

3.  Functional organization of the white gene enhancer in Drosophila melanogaster.

Authors:  L S Melnikova; M V Kostyuchenko; P G Georgiev
Journal:  Dokl Biochem Biophys       Date:  2015-05-05       Impact factor: 0.788

4.  Role of yellow gene sequences from -70 to-146 bp in the transcriptional activation at the end of terminally truncated chromosome in Drosophila melanogaster.

Authors:  L S Melnikova; T G Kahn; M V Kostyuchenko; P G Georgiev
Journal:  Dokl Biochem Biophys       Date:  2015-07-12       Impact factor: 0.788

Review 5.  Throwing transcription for a loop: expression of the genome in the 3D nucleus.

Authors:  Chunhui Hou; Victor G Corces
Journal:  Chromosoma       Date:  2011-11-18       Impact factor: 4.316

6.  EAST affects the activity of Su(Hw) insulators by two different mechanisms in Drosophila melanogaster.

Authors:  Larisa Melnikova; Igor Shapovalov; Margarita Kostyuchenko; Pavel Georgiev; Anton Golovnin
Journal:  Chromosoma       Date:  2016-04-30       Impact factor: 4.316

7.  Promoter-Proximal Chromatin Domain Insulator Protein BEAF Mediates Local and Long-Range Communication with a Transcription Factor and Directly Activates a Housekeeping Promoter in Drosophila.

Authors:  Yuankai Dong; S V Satya Prakash Avva; Mukesh Maharjan; Janice Jacobi; Craig M Hart
Journal:  Genetics       Date:  2020-03-16       Impact factor: 4.562

Review 8.  Mechanisms and proteins involved in long-distance interactions.

Authors:  Oksana Maksimenko; Pavel Georgiev
Journal:  Front Genet       Date:  2014-02-18       Impact factor: 4.599

9.  Effective blocking of the white enhancer requires cooperation between two main mechanisms suggested for the insulator function.

Authors:  Olga Kyrchanova; Oksana Maksimenko; Viacheslav Stakhov; Tatyana Ivlieva; Alexander Parshikov; Vasily M Studitsky; Pavel Georgiev
Journal:  PLoS Genet       Date:  2013-07-04       Impact factor: 5.917

10.  Functional Dissection of the Blocking and Bypass Activities of the Fab-8 Boundary in the Drosophila Bithorax Complex.

Authors:  Olga Kyrchanova; Vladic Mogila; Daniel Wolle; Girish Deshpande; Alexander Parshikov; Fabienne Cléard; Francois Karch; Paul Schedl; Pavel Georgiev
Journal:  PLoS Genet       Date:  2016-07-18       Impact factor: 5.917

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