Literature DB >> 18535150

EcoR124I: from plasmid-encoded restriction-modification system to nanodevice.

James Youell1, Keith Firman.   

Abstract

SUMMARY: Plasmid R124 was first described in 1972 as being a new member of incompatibility group IncFIV, yet early physical investigations of plasmid DNA showed that this type of classification was more complex than first imagined. Throughout the history of the study of this plasmid, there have been many unexpected observations. Therefore, in this review, we describe the history of our understanding of this plasmid and the type I restriction-modification (R-M) system that it encodes, which will allow an opportunity to correct errors, or misunderstandings, that have arisen in the literature. We also describe the characterization of the R-M enzyme EcoR124I and describe the unusual properties of both type I R-M enzymes and EcoR124I in particular. As we approached the 21st century, we began to see the potential of the EcoR124I R-M enzyme as a useful molecular motor, and this leads to a description of recent work that has shown that the R-M enzyme can be used as a nanoactuator. Therefore, this is a history that takes us from a plasmid isolated from (presumably) an infected source to the potential use of the plasmid-encoded R-M enzyme in bionanotechnology.

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Year:  2008        PMID: 18535150      PMCID: PMC2415743          DOI: 10.1128/MMBR.00043-07

Source DB:  PubMed          Journal:  Microbiol Mol Biol Rev        ISSN: 1092-2172            Impact factor:   11.056


  91 in total

1.  Subunit assembly and mode of DNA cleavage of the type III restriction endonucleases EcoP1I and EcoP15I.

Authors:  P Janscak; U Sandmeier; M D Szczelkun; T A Bickle
Journal:  J Mol Biol       Date:  2001-02-23       Impact factor: 5.469

2.  DNA translocation blockage, a general mechanism of cleavage site selection by type I restriction enzymes.

Authors:  P Janscak; M P MacWilliams; U Sandmeier; V Nagaraja; T A Bickle
Journal:  EMBO J       Date:  1999-05-04       Impact factor: 11.598

3.  How restriction enzymes became the workhorses of molecular biology.

Authors:  Richard J Roberts
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-19       Impact factor: 11.205

4.  High resolution footprinting of a type I methyltransferase reveals a large structural distortion within the DNA recognition site.

Authors:  D R Mernagh; G G Kneale
Journal:  Nucleic Acids Res       Date:  1996-12-15       Impact factor: 16.971

5.  Basis for changes in DNA recognition by the EcoR124 and EcoR124/3 type I DNA restriction and modification enzymes.

Authors:  C Price; J Lingner; T A Bickle; K Firman; S W Glover
Journal:  J Mol Biol       Date:  1989-01-05       Impact factor: 5.469

6.  R factor-controlled restriction and modification of deoxyribonucleic acid: restriction mutants.

Authors:  R Yoshimori; D Roulland-Dussoix; H W Boyer
Journal:  J Bacteriol       Date:  1972-12       Impact factor: 3.490

7.  The Escherichia coli B restriction endonuclease.

Authors:  D Roulland-Dussoix; H W Boyer
Journal:  Biochim Biophys Acta       Date:  1969-11-19

Review 8.  DNA modification and restriction.

Authors:  W Arber; S Linn
Journal:  Annu Rev Biochem       Date:  1969       Impact factor: 23.643

9.  The relation of resistance transfer factors to the F-factor (sex-factor) of Escherichia coli K12.

Authors:  E Meynell; N Datta
Journal:  Genet Res       Date:  1966-02       Impact factor: 1.588

10.  Controlling the motor activity of a transcription-repair coupling factor: autoinhibition and the role of RNA polymerase.

Authors:  Abigail J Smith; Mark D Szczelkun; Nigel J Savery
Journal:  Nucleic Acids Res       Date:  2007-02-28       Impact factor: 16.971

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  4 in total

1.  Crystal structure of a novel domain of the motor subunit of the Type I restriction enzyme EcoR124 involved in complex assembly and DNA binding.

Authors:  Pavel Grinkevich; Dhiraj Sinha; Iuliia Iermak; Alena Guzanova; Marie Weiserova; Jost Ludwig; Jeroen R Mesters; Rüdiger H Ettrich
Journal:  J Biol Chem       Date:  2018-07-27       Impact factor: 5.157

2.  pHluorin-assisted expression, purification, crystallization and X-ray diffraction data analysis of the C-terminal domain of the HsdR subunit of the Escherichia coli type I restriction-modification system EcoR124I.

Authors:  Pavel Grinkevich; Iuliia Iermak; Nicholas A Luedtke; Jeroen R Mesters; Rüdiger Ettrich; Jost Ludwig
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-08-09       Impact factor: 1.056

3.  Expression and Purification of BsaXI Restriction Endonuclease and Engineering New Specificity From BsaXI Specificity Subunit.

Authors:  Sonal Gidwani; Daniel Heiter; Shuang-Yong Xu
Journal:  Front Microbiol       Date:  2022-05-19       Impact factor: 6.064

4.  The interrelationship of helicase and nuclease domains during DNA translocation by the molecular motor EcoR124I.

Authors:  Eva Sisáková; Marie Weiserová; Cees Dekker; Ralf Seidel; Mark D Szczelkun
Journal:  J Mol Biol       Date:  2008-10-15       Impact factor: 5.469

  4 in total

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