Literature DB >> 12888504

Lack of sugar discrimination by human Pol mu requires a single glycine residue.

José F Ruiz1, Raquel Juárez, Miguel García-Díaz, Gloria Terrados, Angel J Picher, Sergio González-Barrera, Antonio R Fernández de Henestrosa, Luis Blanco.   

Abstract

DNA polymerase mu (Pol mu) is a novel family X DNA polymerase that has been suggested to play a role in micro-homology mediated joining and repair of double strand breaks. We show here that human Pol mu is not able to discriminate against the 2'-OH group of the sugar moiety. It inserts rNTPs with an efficiency that is <10-fold lower than that of dNTPs, in sharp contrast with the >1000-fold discrimination characteristic of most DNA-dependent DNA polymerases. The lack of sugar discrimination by Pol mu is demonstrated by its ability to add rNTPs to both DNA and RNA primer strands, and to insert both deoxy- and ribonucleotides on growing nucleic acid chains. 3D-modelling of human Pol mu based on the available Pol beta and TdT structural information allowed us to predict candidate residues involved in sugar discrimination. Thus, a single amino acid substitution in which Gly433 residue of Pol mu was mutated to the consensus tyrosine present in Pol beta, produced a strong increase in the discrimination against ribonucleotides. The unusual capacity to insert both rNTPs and dNTPs will be discussed in the context of the predicted roles of Pol mu in DNA repair.

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Year:  2003        PMID: 12888504      PMCID: PMC169901          DOI: 10.1093/nar/gkg637

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  32 in total

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Journal:  J Biol Chem       Date:  2001-09-28       Impact factor: 5.157

2.  Multiple amino acid substitutions allow DNA polymerases to synthesize RNA.

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Journal:  J Biol Chem       Date:  2000-12-22       Impact factor: 5.157

3.  Oligodeoxyribonucleotide-primed reactions catalyzed by calf thymus polymerase.

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4.  Coupling ribose selection to fidelity of DNA synthesis. The role of Tyr-115 of human immunodeficiency virus type 1 reverse transcriptase.

Authors:  C E Cases-Gonzalez; M Gutierrez-Rivas; L Ménendez-Arias
Journal:  J Biol Chem       Date:  2000-06-30       Impact factor: 5.157

Review 5.  DNA polymerase mu, a candidate hypermutase?

Authors:  J F Ruiz; O Domínguez; T Laín de Lera; M Garcia-Díaz; A Bernad; L Blanco
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2001-01-29       Impact factor: 6.237

6.  Terminal deoxynucleotidyl transferase indiscriminately incorporates ribonucleotides and deoxyribonucleotides.

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7.  Highly frequent frameshift DNA synthesis by human DNA polymerase mu.

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8.  Association of terminal deoxynucleotidyl transferase with Ku.

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9.  Enhanced ribonucleotide incorporation by an O-helix mutant of Thermus aquaticus DNA polymerase I.

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10.  DNA polymerase lambda (Pol lambda), a novel eukaryotic DNA polymerase with a potential role in meiosis.

Authors:  M García-Díaz; O Domínguez; L A López-Fernández; L T de Lera; M L Saníger; J F Ruiz; M Párraga; M J García-Ortiz; T Kirchhoff; J del Mazo; A Bernad; L Blanco
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  51 in total

Review 1.  Polymerases in nonhomologous end joining: building a bridge over broken chromosomes.

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2.  Direct comparison of nick-joining activity of the nucleic acid ligases from bacteriophage T4.

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Journal:  Biochem J       Date:  2006-08-15       Impact factor: 3.857

Review 3.  The X family portrait: structural insights into biological functions of X family polymerases.

Authors:  Andrea F Moon; Miguel Garcia-Diaz; Vinod K Batra; William A Beard; Katarzyna Bebenek; Thomas A Kunkel; Samuel H Wilson; Lars C Pedersen
Journal:  DNA Repair (Amst)       Date:  2007-07-12

Review 4.  Unlocking the sugar "steric gate" of DNA polymerases.

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Journal:  Biochemistry       Date:  2011-01-26       Impact factor: 3.162

5.  Molecular insights into DNA polymerase deterrents for ribonucleotide insertion.

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6.  Replication of ribonucleotide-containing DNA templates by yeast replicative polymerases.

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Review 7.  The molecular basis and disease relevance of non-homologous DNA end joining.

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8.  A novel mechanism of sugar selection utilized by a human X-family DNA polymerase.

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9.  Altered hematopoiesis in mice lacking DNA polymerase mu is due to inefficient double-strand break repair.

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10.  Conferring a template-dependent polymerase activity to terminal deoxynucleotidyltransferase by mutations in the Loop1 region.

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Journal:  Nucleic Acids Res       Date:  2009-06-05       Impact factor: 16.971

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