Literature DB >> 25484456

From Physics to Pharmacology?

Richard J Allen1, Timothy C Elston1.   

Abstract

Over the last fifty years there has been an explosion of biological data, leading to the realization that to fully explain biological mechanisms it is necessary to interpret them as complex dynamical systems. The first stage of this interpretation is to determine which components (proteins, genes or metabolites) of the system interact. This is usually represented by a graph, or network. The behavior of this network can then be investigated using mathematical modeling. In vivo these biological networks show several remarkable (and seemingly paradoxical) properties including robustness, plasticity and sensitivity. Erroneous behavior of these networks is often associated with disease. Hence understanding the system-level properties can have important implications for the treatment of disease. Systems biology is an organized approach to quantitatively describe and elucidate the behavior of these complex networks. This review focuses on the progress and future challenges of a systems approach to biology.

Entities:  

Year:  2011        PMID: 25484456      PMCID: PMC4256083          DOI: 10.1088/0034-4885/74/1/016601

Source DB:  PubMed          Journal:  Rep Prog Phys        ISSN: 0034-4885


  79 in total

1.  Emergence of scaling in random networks

Authors: 
Journal:  Science       Date:  1999-10-15       Impact factor: 47.728

2.  A natural class of robust networks.

Authors:  Maximino Aldana; Philippe Cluzel
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-09       Impact factor: 11.205

3.  Two complementary, local excitation, global inhibition mechanisms acting in parallel can explain the chemoattractant-induced regulation of PI(3,4,5)P3 response in dictyostelium cells.

Authors:  Lan Ma; Chris Janetopoulos; Liu Yang; Peter N Devreotes; Pablo A Iglesias
Journal:  Biophys J       Date:  2004-10-01       Impact factor: 4.033

Review 4.  Hierarchical thinking in network biology: the unbiased modularization of biochemical networks.

Authors:  Jason A Papin; Jennifer L Reed; Bernhard O Palsson
Journal:  Trends Biochem Sci       Date:  2004-12       Impact factor: 13.807

5.  Mathematical model for spatial segregation of the Rho-family GTPases based on inhibitory crosstalk.

Authors:  Alexandra Jilkine; Athanasius F M Marée; Leah Edelstein-Keshet
Journal:  Bull Math Biol       Date:  2007-04-25       Impact factor: 1.758

6.  Signal processing through a generalized module of adaptation and spatial sensing.

Authors:  J Krishnan
Journal:  J Theor Biol       Date:  2009-02-28       Impact factor: 2.691

7.  Bayesian network approach to cell signaling pathway modeling.

Authors:  Karen Sachs; David Gifford; Tommi Jaakkola; Peter Sorger; Douglas A Lauffenburger
Journal:  Sci STKE       Date:  2002-09-03

Review 8.  The cancer genome.

Authors:  Michael R Stratton; Peter J Campbell; P Andrew Futreal
Journal:  Nature       Date:  2009-04-09       Impact factor: 49.962

9.  Computational analysis of viscoelastic properties of crosslinked actin networks.

Authors:  Taeyoon Kim; Wonmuk Hwang; Hyungsuk Lee; Roger D Kamm
Journal:  PLoS Comput Biol       Date:  2009-07-17       Impact factor: 4.475

10.  An analytically solvable model for rapid evolution of modular structure.

Authors:  Nadav Kashtan; Avi E Mayo; Tomer Kalisky; Uri Alon
Journal:  PLoS Comput Biol       Date:  2009-04-10       Impact factor: 4.475

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  3 in total

1.  Network structure from a characterization of interactions in complex systems.

Authors:  Thorsten Rings; Timo Bröhl; Klaus Lehnertz
Journal:  Sci Rep       Date:  2022-07-11       Impact factor: 4.996

2.  Modeling fructose-load-induced hepatic de-novo lipogenesis by model simplification.

Authors:  Richard J Allen; Cynthia J Musante
Journal:  Gene Regul Syst Bio       Date:  2017-04-12

3.  A straightforward edge centrality concept derived from generalizing degree and strength.

Authors:  Timo Bröhl; Klaus Lehnertz
Journal:  Sci Rep       Date:  2022-03-15       Impact factor: 4.379

  3 in total

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