| Literature DB >> 12824331 |
Narayanan Eswar1, Bino John, Nebojsa Mirkovic, Andras Fiser, Valentin A Ilyin, Ursula Pieper, Ashley C Stuart, Marc A Marti-Renom, M S Madhusudhan, Bozidar Yerkovich, Andrej Sali.
Abstract
The following resources for comparative protein structure modeling and analysis are described (http://salilab.org): MODELLER, a program for comparative modeling by satisfaction of spatial restraints; MODWEB, a web server for automated comparative modeling that relies on PSI-BLAST, IMPALA and MODELLER; MODLOOP, a web server for automated loop modeling that relies on MODELLER; MOULDER, a CPU intensive protocol of MODWEB for building comparative models based on distant known structures; MODBASE, a comprehensive database of annotated comparative models for all sequences detectably related to a known structure; MODVIEW, a Netscape plugin for Linux that integrates viewing of multiple sequences and structures; and SNPWEB, a web server for structure-based prediction of the functional impact of a single amino acid substitution.Entities:
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Year: 2003 PMID： 12824331 PMCID： PMC168950 DOI： 10.1093/nar/gkg543
Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971