Literature DB >> 3550471

Knowledge-based prediction of protein structures and the design of novel molecules.

T L Blundell, B L Sibanda, M J Sternberg, J M Thornton.   

Abstract

Prediction of the tertiary structures of proteins may be carried out using a knowledge-based approach. This depends on identification of analogies in secondary structures, motifs, domains or ligand interactions between a protein to be modelled and those of known three-dimensional structures. Such techniques are of value in prediction of receptor structures to aid the design of drugs, herbicides or pesticides, antigens in vaccine design, and novel molecules in protein engineering.

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Year:  1987        PMID: 3550471     DOI: 10.1038/326347a0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  106 in total

1.  Refinement of modelled structures by knowledge-based energy profiles and secondary structure prediction: application to the human procarboxypeptidase A2.

Authors:  P Aloy; J M Mas; M A Martí-Renom; E Querol; F X Avilés; B Oliva
Journal:  J Comput Aided Mol Des       Date:  2000-01       Impact factor: 3.686

2.  Protein structure determination using a database of interatomic distance probabilities.

Authors:  M E Wall; S Subramaniam; G N Phillips
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

3.  Analysis of interactive packing of secondary structural elements in alpha/beta units in proteins.

Authors:  B V Reddy; H A Nagarajaram; T L Blundell
Journal:  Protein Sci       Date:  1999-03       Impact factor: 6.725

4.  Modeling of loops in protein structures.

Authors:  A Fiser; R K Do; A Sali
Journal:  Protein Sci       Date:  2000-09       Impact factor: 6.725

5.  Statistical potentials for fold assessment.

Authors:  Francisco Melo; Roberto Sánchez; Andrej Sali
Journal:  Protein Sci       Date:  2002-02       Impact factor: 6.725

6.  A stochastic algorithm for global optimization and for best populations: a test case of side chains in proteins.

Authors:  Meir Glick; Anwar Rayan; Amiram Goldblum
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-15       Impact factor: 11.205

7.  Definition of the tempo of sequence diversity across an alignment and automatic identification of sequence motifs: Application to protein homologous families and superfamilies.

Authors:  Alex C W May
Journal:  Protein Sci       Date:  2002-12       Impact factor: 6.725

8.  Tools for comparative protein structure modeling and analysis.

Authors:  Narayanan Eswar; Bino John; Nebojsa Mirkovic; Andras Fiser; Valentin A Ilyin; Ursula Pieper; Ashley C Stuart; Marc A Marti-Renom; M S Madhusudhan; Bozidar Yerkovich; Andrej Sali
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

9.  Discrete restraint-based protein modeling and the Calpha-trace problem.

Authors:  Mark A DePristo; Paul I W De Bakker; Reshma P Shetty; Tom L Blundell
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

Review 10.  B-cell epitopes of scleroderma-specific autoantigens.

Authors:  R Verheijen
Journal:  Mol Biol Rep       Date:  1992-06       Impact factor: 2.316

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