Literature DB >> 12812494

Comparisons of phosphorothioate with phosphate transfer reactions for a monoester, diester, and triester: isotope effect studies.

Irina E Catrina1, Alvan C Hengge.   

Abstract

Phosphorothioate esters are sometimes used as surrogates for phosphate ester substrates in studies of enzymatic phosphoryl transfer reactions. To gain better understanding of the comparative inherent chemistry of the two types of esters, we have measured equilibrium and kinetic isotope effects for several phosphorothioate esters of p-nitrophenol (pNPPT) and compared the results with data from phosphate esters. The primary (18)O isotope effect at the phenolic group ((18)k(bridge)), the secondary nitrogen-15 isotope effect ((15)k) in the nitro group, and (for the monoester and diester) the secondary oxygen-18 isotope effect ((18)k(nonbridge)) in the phosphoryl oxygens were measured. The equilibrium isotope effect (EIE) (18)k(nonbridge) for the deprotonation of the monoanion of pNPPT is 1.015 +/- 0.002, very similar to values previously reported for phosphate monoesters. The EIEs for complexation of Zn(2+) and Cd(2+) with the dianion pNPPT(2-) were both unity. The mechanism of the aqueous hydrolysis of the monoanion and dianion of pNPPT, the diester ethyl pNPPT, and the triester dimethyl pNPPT was probed using heavy atom kinetic isotope effects. The results were compared with the data reported for analogous phosphate monoester, diester, and triester reactions. The results suggest that leaving group bond fission in the transition state of reactions of the monoester pNPPT is more advanced than for its phosphate counterpart pNPP, while alkaline hydrolysis of the phosphorothioate diester and triester exhibits somewhat less advanced bond fission than that of their phosphate ester counterparts.

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Year:  2003        PMID: 12812494     DOI: 10.1021/ja0340026

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  9 in total

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Review 2.  Probing enzyme phosphoester interactions by combining mutagenesis and chemical modification of phosphate ester oxygens.

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Journal:  J Am Chem Soc       Date:  2008-12-31       Impact factor: 15.419

4.  The effects of sulfur substitution for the nucleophile and bridging oxygen atoms in reactions of hydroxyalkyl phosphate esters.

Authors:  Subashree Iyer; Alvan C Hengge
Journal:  J Org Chem       Date:  2008-06-06       Impact factor: 4.354

5.  Kinetic isotope effects for alkaline phosphatase reactions: implications for the role of active-site metal ions in catalysis.

Authors:  Jesse G Zalatan; Irina Catrina; Rebecca Mitchell; Piotr K Grzyska; Patrick J O'brien; Daniel Herschlag; Alvan C Hengge
Journal:  J Am Chem Soc       Date:  2007-07-14       Impact factor: 15.419

6.  Probing the origin of the compromised catalysis of E. coli alkaline phosphatase in its promiscuous sulfatase reaction.

Authors:  Irina Catrina; Patrick J O'Brien; Jamie Purcell; Ivana Nikolic-Hughes; Jesse G Zalatan; Alvan C Hengge; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2007-04-06       Impact factor: 15.419

7.  Mechanistic insights into RNA transphosphorylation from kinetic isotope effects and linear free energy relationships of model reactions.

Authors:  Haoyuan Chen; Timothy J Giese; Ming Huang; Kin-Yiu Wong; Michael E Harris; Darrin M York
Journal:  Chemistry       Date:  2014-09-15       Impact factor: 5.236

8.  Inverse thio effects in the hepatitis delta virus ribozyme reveal that the reaction pathway is controlled by metal ion charge density.

Authors:  Pallavi Thaplyal; Abir Ganguly; Sharon Hammes-Schiffer; Philip C Bevilacqua
Journal:  Biochemistry       Date:  2015-03-23       Impact factor: 3.162

Review 9.  Promiscuity in the Enzymatic Catalysis of Phosphate and Sulfate Transfer.

Authors:  Anna Pabis; Fernanda Duarte; Shina C L Kamerlin
Journal:  Biochemistry       Date:  2016-05-26       Impact factor: 3.162

  9 in total

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