Literature DB >> 17411045

Probing the origin of the compromised catalysis of E. coli alkaline phosphatase in its promiscuous sulfatase reaction.

Irina Catrina1, Patrick J O'Brien, Jamie Purcell, Ivana Nikolic-Hughes, Jesse G Zalatan, Alvan C Hengge, Daniel Herschlag.   

Abstract

The catalytic promiscuity of E. coli alkaline phosphatase (AP) and many other enzymes provides a unique opportunity to dissect the origin of enzymatic rate enhancements via a comparative approach. Here, we use kinetic isotope effects (KIEs) to explore the origin of the 109-fold greater catalytic proficiency by AP for phosphate monoester hydrolysis relative to sulfate monoester hydrolysis. The primary 18O KIEs for the leaving group oxygen atoms in the AP-catalyzed hydrolysis of p-nitrophenyl phosphate (pNPP) and p-nitrophenylsulfate (pNPS) decrease relative to the values observed for nonenzymatic hydrolysis reactions. Prior linear free energy relationship results suggest that the transition states for AP-catalyzed reactions of phosphate and sulfate esters are "loose" and indistinguishable from that in solution, suggesting that the decreased primary KIEs do not reflect a change in the nature of the transition state but rather a strong interaction of the leaving group oxygen atom with an active site Zn2+ ion. Furthermore, the primary KIEs for the two reactions are identical within error, suggesting that the differential catalysis of these reactions cannot be attributed to differential stabilization of the leaving group. In contrast, AP perturbs the KIE for the nonbridging oxygen atoms in the reaction of pNPP but not pNPS, suggesting a differential interaction with the transferred group in the transition state. These and prior results are consistent with a strong electrostatic interaction between the active site bimetallo Zn2+ cluster and one of the nonbridging oxygen atoms on the transferred group. We suggest that the lower charge density of this oxygen atom on a transferred sulfuryl group accounts for a large fraction of the decreased stabilization of the transition state for its reaction relative to phosphoryl transfer.

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Year:  2007        PMID: 17411045      PMCID: PMC2532492          DOI: 10.1021/ja069111+

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  48 in total

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5.  Site-directed mutagenesis: a tool for studying enzyme catalysis.

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Authors:  R A Jensen
Journal:  Annu Rev Microbiol       Date:  1976       Impact factor: 15.500

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Authors:  E E Kim; H W Wyckoff
Journal:  J Mol Biol       Date:  1991-03-20       Impact factor: 5.469

8.  Isotope effects and medium effects on sulfuryl transfer reactions.

Authors:  R H Hoff; P Larsen; A C Hengge
Journal:  J Am Chem Soc       Date:  2001-09-26       Impact factor: 15.419

Review 9.  Sulfatases: structure, mechanism, biological activity, inhibition, and synthetic utility.

Authors:  Sarah R Hanson; Michael D Best; Chi-Huey Wong
Journal:  Angew Chem Int Ed Engl       Date:  2004-11-05       Impact factor: 15.336

Review 10.  Structure and mechanism of alkaline phosphatase.

Authors:  J E Coleman
Journal:  Annu Rev Biophys Biomol Struct       Date:  1992
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  20 in total

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4.  Differences in the Nature of the Phosphoryl Transfer Transition State in Protein Phosphatase 1 and Alkaline Phosphatase: Insights from QM Cluster Models.

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6.  Comparative enzymology in the alkaline phosphatase superfamily to determine the catalytic role of an active-site metal ion.

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Review 7.  Why nature really chose phosphate.

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8.  Leaving Group Ability Observably Affects Transition State Structure in a Single Enzyme Active Site.

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Journal:  J Am Chem Soc       Date:  2016-06-02       Impact factor: 15.419

9.  Experimental and computational analysis of the transition state for ribonuclease A-catalyzed RNA 2'-O-transphosphorylation.

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10.  Mechanistic study of protein phosphatase-1 (PP1), a catalytically promiscuous enzyme.

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Journal:  J Am Chem Soc       Date:  2008-09-18       Impact factor: 15.419

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