Literature DB >> 12810914

An siRNA ribonucleoprotein is found associated with polyribosomes in Trypanosoma brucei.

Appolinaire Djikeng1, Huafang Shi, Christian Tschudi, Shuiyuan Shen, Elisabetta Ullu.   

Abstract

Genetic interference by double-stranded RNA (dsRNA) or RNA interference (RNAi) triggers the sequence-specific degradation of cellular transcripts. The mediators of mRNA degradation are small interfering RNAs (siRNAs). Here, we report that in Trypanosoma brucei, 10%-20% of siRNAs cosediment with polyribosomes. Preventing the assembly of ribosomes on mRNAs results in a concomitant decrease of siRNAs sedimenting as high-molecular-weight complexes. We further provide evidence that siRNAs are associated with translating ribosomes and that this association is mediated by a 70-kD ribonucleoprotein complex.

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Year:  2003        PMID: 12810914      PMCID: PMC1370447          DOI: 10.1261/rna.5270203

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  23 in total

1.  RNA interference is mediated by 21- and 22-nucleotide RNAs.

Authors:  S M Elbashir; W Lendeckel; T Tuschl
Journal:  Genes Dev       Date:  2001-01-15       Impact factor: 11.361

2.  RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals.

Authors:  P D Zamore; T Tuschl; P A Sharp; D P Bartel
Journal:  Cell       Date:  2000-03-31       Impact factor: 41.582

3.  A species of small antisense RNA in posttranscriptional gene silencing in plants.

Authors:  A J Hamilton; D C Baulcombe
Journal:  Science       Date:  1999-10-29       Impact factor: 47.728

Review 4.  RNA interference--2001.

Authors:  P A Sharp
Journal:  Genes Dev       Date:  2001-03-01       Impact factor: 11.361

5.  Genetic interference in Trypanosoma brucei by heritable and inducible double-stranded RNA.

Authors:  H Shi; A Djikeng; T Mark; E Wirtz; C Tschudi; E Ullu
Journal:  RNA       Date:  2000-07       Impact factor: 4.942

Review 6.  RNA interference: listening to the sound of silence.

Authors:  P D Zamore
Journal:  Nat Struct Biol       Date:  2001-09

7.  Argonaute2, a link between genetic and biochemical analyses of RNAi.

Authors:  S M Hammond; S Boettcher; A A Caudy; R Kobayashi; G J Hannon
Journal:  Science       Date:  2001-08-10       Impact factor: 47.728

8.  The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit.

Authors:  D E Brodersen; W M Clemons; A P Carter; R J Morgan-Warren; B T Wimberly; V Ramakrishnan
Journal:  Cell       Date:  2000-12-22       Impact factor: 41.582

9.  Role for a bidentate ribonuclease in the initiation step of RNA interference.

Authors:  E Bernstein; A A Caudy; S M Hammond; G J Hannon
Journal:  Nature       Date:  2001-01-18       Impact factor: 49.962

10.  A tightly regulated inducible expression system for conditional gene knock-outs and dominant-negative genetics in Trypanosoma brucei.

Authors:  E Wirtz; S Leal; C Ochatt; G A Cross
Journal:  Mol Biochem Parasitol       Date:  1999-03-15       Impact factor: 1.759

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  27 in total

Review 1.  RNA interference and mRNA silencing, 2004: how far will they reach?

Authors:  Thoru Pederson
Journal:  Mol Biol Cell       Date:  2003-12-02       Impact factor: 4.138

2.  Characterization of the interactions between mammalian PAZ PIWI domain proteins and Dicer.

Authors:  Nasser Tahbaz; Fabrice A Kolb; Haidi Zhang; Katarzyna Jaronczyk; Witold Filipowicz; Tom C Hobman
Journal:  EMBO Rep       Date:  2004-01-16       Impact factor: 8.807

3.  Argonaute protein in the early divergent eukaryote Trypanosoma brucei: control of small interfering RNA accumulation and retroposon transcript abundance.

Authors:  Huafang Shi; Appolinaire Djikeng; Christian Tschudi; Elisabetta Ullu
Journal:  Mol Cell Biol       Date:  2004-01       Impact factor: 4.272

4.  Effects on RNAi of the tight structure, sequence and position of the targeted region.

Authors:  Koichi Yoshinari; Makoto Miyagishi; Kazunari Taira
Journal:  Nucleic Acids Res       Date:  2004-02-03       Impact factor: 16.971

5.  miRNP:mRNA association in polyribosomes in a human neuronal cell line.

Authors:  Peter T Nelson; Artemis G Hatzigeorgiou; Zissimos Mourelatos
Journal:  RNA       Date:  2004-03       Impact factor: 4.942

6.  Uncoupling of RNAi from active translation in mammalian cells.

Authors:  Shuo Gu; John J Rossi
Journal:  RNA       Date:  2004-12-01       Impact factor: 4.942

Review 7.  The emerging world of small silencing RNAs in protozoan parasites.

Authors:  Vanessa D Atayde; Christian Tschudi; Elisabetta Ullu
Journal:  Trends Parasitol       Date:  2011-04-15

8.  Predicting helical coaxial stacking in RNA multibranch loops.

Authors:  Rahul Tyagi; David H Mathews
Journal:  RNA       Date:  2007-05-16       Impact factor: 4.942

9.  RNA interference in Trypanosoma brucei: role of the n-terminal RGG domain and the polyribosome association of argonaute.

Authors:  Huafang Shi; Nathalie Chamond; Appolinaire Djikeng; Christian Tschudi; Elisabetta Ullu
Journal:  J Biol Chem       Date:  2009-10-30       Impact factor: 5.157

10.  Novel and essential subunits in the 300-kilodalton nuclear cap binding complex of Trypanosoma brucei.

Authors:  Hongjie Li; Christian Tschudi
Journal:  Mol Cell Biol       Date:  2005-03       Impact factor: 4.272

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