Literature DB >> 12808129

Single-molecule detection of DNA hybridization.

Mukta Singh-Zocchi1, Sanhita Dixit, Vassili Ivanov, Giovanni Zocchi.   

Abstract

We demonstrate the detection of nanometer-scale conformational changes of single DNA oligomers through a micromechanical technique. The quantity monitored is the displacement of a micrometer-size bead tethered to a surface by the probe molecule undergoing the conformational change. This technique allows probing of conformational changes within distances beyond the range of fluorescence resonance energy transfer. We apply the method to detect single hybridization events of label-free target oligomers. Hybridization of the target is detected through the conformational change of the probe.

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Year:  2003        PMID: 12808129      PMCID: PMC164633          DOI: 10.1073/pnas.1337215100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  Electrostatic surface plasmon resonance: direct electric field-induced hybridization and denaturation in monolayer nucleic acid films and label-free discrimination of base mismatches.

Authors:  R J Heaton; A W Peterson; R M Georgiadis
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-20       Impact factor: 11.205

2.  Single-target molecule detection with nonbleaching multicolor optical immunolabels.

Authors:  S Schultz; D R Smith; J J Mock; D A Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-01       Impact factor: 11.205

3.  Screening unlabeled DNA targets with randomly ordered fiber-optic gene arrays.

Authors:  F J Steemers; J A Ferguson; D R Walt
Journal:  Nat Biotechnol       Date:  2000-01       Impact factor: 54.908

4.  Multiplex detection of single-nucleotide variations using molecular beacons.

Authors:  S A Marras; F R Kramer; S Tyagi
Journal:  Genet Anal       Date:  1999-02

5.  Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads.

Authors:  S B Smith; L Finzi; C Bustamante
Journal:  Science       Date:  1992-11-13       Impact factor: 47.728

6.  Molecular beacons: probes that fluoresce upon hybridization.

Authors:  S Tyagi; F R Kramer
Journal:  Nat Biotechnol       Date:  1996-03       Impact factor: 54.908

7.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

8.  Species-specific long range interactions between receptor/ligand pairs.

Authors:  R B Liebert; D C Prieve
Journal:  Biophys J       Date:  1995-07       Impact factor: 4.033

9.  Direct observation of enzyme activity with the atomic force microscope.

Authors:  M Radmacher; M Fritz; H G Hansma; P K Hansma
Journal:  Science       Date:  1994-09-09       Impact factor: 47.728

10.  A fiber-optic DNA biosensor microarray for the analysis of gene expression.

Authors:  J A Ferguson; T C Boles; C P Adams; D R Walt
Journal:  Nat Biotechnol       Date:  1996-12       Impact factor: 54.908

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  21 in total

1.  Homogeneous detection of unamplified genomic DNA sequences based on colorimetric scatter of gold nanoparticle probes.

Authors:  James J Storhoff; Adam D Lucas; Viswanadham Garimella; Y Paul Bao; Uwe R Müller
Journal:  Nat Biotechnol       Date:  2004-05-30       Impact factor: 54.908

2.  Simultaneous atomic force microscope and fluorescence measurements of protein unfolding using a calibrated evanescent wave.

Authors:  Atom Sarkar; Ragan B Robertson; Julio M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-23       Impact factor: 11.205

3.  Single-molecule mechanical identification and sequencing.

Authors:  Fangyuan Ding; Maria Manosas; Michelle M Spiering; Stephen J Benkovic; David Bensimon; Jean-François Allemand; Vincent Croquette
Journal:  Nat Methods       Date:  2012-03-11       Impact factor: 28.547

4.  Three-dimensional characterization of tethered microspheres by total internal reflection fluorescence microscopy.

Authors:  Seth Blumberg; Arivalagan Gajraj; Matthew W Pennington; Jens-Christian Meiners
Journal:  Biophys J       Date:  2005-05-27       Impact factor: 4.033

5.  Volume-exclusion effects in tethered-particle experiments: bead size matters.

Authors:  Darren E Segall; Philip C Nelson; Rob Phillips
Journal:  Phys Rev Lett       Date:  2006-03-03       Impact factor: 9.161

6.  Use of plasmon coupling to reveal the dynamics of DNA bending and cleavage by single EcoRV restriction enzymes.

Authors:  Björn M Reinhard; Sassan Sheikholeslami; Alexander Mastroianni; A Paul Alivisatos; Jan Liphardt
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-16       Impact factor: 11.205

Review 7.  Single cell optical imaging and spectroscopy.

Authors:  Anthony S Stender; Kyle Marchuk; Chang Liu; Suzanne Sander; Matthew W Meyer; Emily A Smith; Bhanu Neupane; Gufeng Wang; Junjie Li; Ji-Xin Cheng; Bo Huang; Ning Fang
Journal:  Chem Rev       Date:  2013-02-14       Impact factor: 60.622

8.  Enhanced Single-Molecule Detection using Porous Silver Membrane.

Authors:  Yi Fu; Joseph R Lakowicz
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2010-04-29       Impact factor: 4.126

9.  Optical response of magnetic fluorescent microspheres used for force spectroscopy in the evanescent field.

Authors:  Alex Bijamov; Fridon Shubitidze; Piercen M Oliver; Dmitri V Vezenov
Journal:  Langmuir       Date:  2010-07-20       Impact factor: 3.882

10.  Parallax: high accuracy three-dimensional single molecule tracking using split images.

Authors:  Yujie Sun; Jennine Dawicki McKenna; John M Murray; E Michael Ostap; Yale E Goldman
Journal:  Nano Lett       Date:  2009-07       Impact factor: 11.189

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