Literature DB >> 11718664

Brownian dynamics study of an open-state KcsA potassium channel.

T W Allen1, S H Chung.   

Abstract

Three-dimensional Brownian dynamics simulations are used to study conductance of the KcsA potassium channel using the known crystallographic structure. Employing an open-state channel created by molecular dynamics simulations, current-voltage and current-concentration curves broadly consistent with experimental measurements are obtained. In the absence of an applied potential, the channel houses three potassium ions at positions that are in close agreement with X-ray diffraction maps.

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Year:  2001        PMID: 11718664     DOI: 10.1016/s0005-2736(01)00395-9

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  21 in total

1.  Reservoir boundaries in Brownian dynamics simulations of ion channels.

Authors:  Ben Corry; Matthew Hoyles; Toby W Allen; Michael Walker; Serdar Kuyucak; Shin-Ho Chung
Journal:  Biophys J       Date:  2002-04       Impact factor: 4.033

2.  KcsA closed and open: modelling and simulation studies.

Authors:  John Holyoake; Carmen Domene; Joanne N Bright; Mark S P Sansom
Journal:  Eur Biophys J       Date:  2003-10-22       Impact factor: 1.733

3.  Modeling diverse range of potassium channels with Brownian dynamics.

Authors:  Shin-Ho Chung; Toby W Allen; Serdar Kuyucak
Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

4.  Conduction mechanisms of chloride ions in ClC-type channels.

Authors:  Ben Corry; Megan O'Mara; Shin-Ho Chung
Journal:  Biophys J       Date:  2004-02       Impact factor: 4.033

5.  Fast gating in the Shaker K+ channel and the energy landscape of activation.

Authors:  Daniel Sigg; Francisco Bezanilla; Enrico Stefani
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-12       Impact factor: 11.205

6.  A model of the glycine receptor deduced from Brownian dynamics studies.

Authors:  Megan O'Mara; Peter H Barry; Shin-Ho Chung
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-20       Impact factor: 11.205

7.  Filter flexibility and distortion in a bacterial inward rectifier K+ channel: simulation studies of KirBac1.1.

Authors:  Carmen Domene; Alessandro Grottesi; Mark S P Sansom
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

8.  Permeation and block of the Kv1.2 channel examined using brownian and molecular dynamics.

Authors:  Dan Gordon; Shin-Ho Chung
Journal:  Biophys J       Date:  2011-12-07       Impact factor: 4.033

9.  Ion conductance vs. pore gating and selectivity in KcsA channel: modeling achievements and perspectives.

Authors:  Céline Boiteux; Sebastian Kraszewski; Christophe Ramseyer; Claude Girardet
Journal:  J Mol Model       Date:  2007-04-06       Impact factor: 1.810

10.  On the importance of atomic fluctuations, protein flexibility, and solvent in ion permeation.

Authors:  Toby W Allen; O S Andersen; Benoit Roux
Journal:  J Gen Physiol       Date:  2004-12       Impact factor: 4.086

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