Literature DB >> 22713585

Microscopic origin of gating current fluctuations in a potassium channel voltage sensor.

J Alfredo Freites1, Eric V Schow, Stephen H White, Douglas J Tobias.   

Abstract

Voltage-dependent ion channels open and close in response to changes in membrane electrical potential due to the motion of their voltage-sensing domains (VSDs). VSD charge displacements within the membrane electric field are observed in electrophysiology experiments as gating currents preceding ionic conduction. The elementary charge motions that give rise to the gating current cannot be observed directly, but appear as discrete current pulses that generate fluctuations in gating current measurements. Here we report direct observation of gating-charge displacements in an atomistic molecular dynamics simulation of the isolated VSD from the KvAP channel in a hydrated lipid bilayer on the timescale (10-μs) expected for elementary gating charge transitions. The results reveal that gating-charge displacements are associated with the water-catalyzed rearrangement of salt bridges between the S4 arginines and a set of conserved acidic side chains on the S1-S3 transmembrane segments in the hydrated interior of the VSD.
Copyright © 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22713585      PMCID: PMC3368149          DOI: 10.1016/j.bpj.2012.04.021

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  30 in total

1.  A voltage-sensor water pore.

Authors:  J Alfredo Freites; Douglas J Tobias; Stephen H White
Journal:  Biophys J       Date:  2006-09-29       Impact factor: 4.033

2.  Sequential formation of ion pairs during activation of a sodium channel voltage sensor.

Authors:  Paul G DeCaen; Vladimir Yarov-Yarovoy; Elizabeth M Sharp; Todd Scheuer; William A Catterall
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-10       Impact factor: 11.205

3.  Fluctuations in ion channel gating currents. Analysis of nonstationary shot noise.

Authors:  S C Crouzy; F J Sigworth
Journal:  Biophys J       Date:  1993-01       Impact factor: 4.033

4.  Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types.

Authors:  Jeffery B Klauda; Richard M Venable; J Alfredo Freites; Joseph W O'Connor; Douglas J Tobias; Carlos Mondragon-Ramirez; Igor Vorobyov; Alexander D MacKerell; Richard W Pastor
Journal:  J Phys Chem B       Date:  2010-06-17       Impact factor: 2.991

5.  State-dependent electrostatic interactions of S4 arginines with E1 in S2 during Kv7.1 activation.

Authors:  Dick Wu; Kelli Delaloye; Mark A Zaydman; Ali Nekouzadeh; Yoram Rudy; Jianmin Cui
Journal:  J Gen Physiol       Date:  2010-05-17       Impact factor: 4.086

6.  Contribution of hydrophobic and electrostatic interactions to the membrane integration of the Shaker K+ channel voltage sensor domain.

Authors:  Liyan Zhang; Yoko Sato; Tara Hessa; Gunnar von Heijne; Jong-Kook Lee; Itsuo Kodama; Masao Sakaguchi; Nobuyuki Uozumi
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-08       Impact factor: 11.205

7.  Atomic structure of a voltage-dependent K+ channel in a lipid membrane-like environment.

Authors:  Stephen B Long; Xiao Tao; Ernest B Campbell; Roderick MacKinnon
Journal:  Nature       Date:  2007-11-15       Impact factor: 49.962

8.  Specificity of charge-carrying residues in the voltage sensor of potassium channels.

Authors:  Christopher A Ahern; Richard Horn
Journal:  J Gen Physiol       Date:  2004-02-09       Impact factor: 4.086

9.  A gating charge transfer center in voltage sensors.

Authors:  Xiao Tao; Alice Lee; Walrati Limapichat; Dennis A Dougherty; Roderick MacKinnon
Journal:  Science       Date:  2010-04-02       Impact factor: 47.728

10.  Structure and hydration of membranes embedded with voltage-sensing domains.

Authors:  Dmitriy Krepkiy; Mihaela Mihailescu; J Alfredo Freites; Eric V Schow; David L Worcester; Klaus Gawrisch; Douglas J Tobias; Stephen H White; Kenton J Swartz
Journal:  Nature       Date:  2009-11-26       Impact factor: 49.962

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  10 in total

1.  Voltage-Dependent Profile Structures of a Kv-Channel via Time-Resolved Neutron Interferometry.

Authors:  Andrey Y Tronin; Lina J Maciunas; Kimberly C Grasty; Patrick J Loll; Haile A Ambaye; Andre A Parizzi; Valeria Lauter; Andrew D Geragotelis; J Alfredo Freites; Douglas J Tobias; J Kent Blasie
Journal:  Biophys J       Date:  2019-07-16       Impact factor: 4.033

Review 2.  Voltage Sensing in Membranes: From Macroscopic Currents to Molecular Motions.

Authors:  J Alfredo Freites; Douglas J Tobias
Journal:  J Membr Biol       Date:  2015-05-14       Impact factor: 1.843

3.  Dynamics of internal pore opening in K(V) channels probed by a fluorescent unnatural amino acid.

Authors:  Tanja Kalstrup; Rikard Blunck
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-29       Impact factor: 11.205

Review 4.  Small molecule modulation of voltage gated sodium channels.

Authors:  Vincenzo Carnevale; Michael L Klein
Journal:  Curr Opin Struct Biol       Date:  2017-03-28       Impact factor: 6.809

5.  Voltage-dependent structural models of the human Hv1 proton channel from long-timescale molecular dynamics simulations.

Authors:  Andrew D Geragotelis; Mona L Wood; Hendrik Göddeke; Liang Hong; Parker D Webster; Eric K Wong; J Alfredo Freites; Francesco Tombola; Douglas J Tobias
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-27       Impact factor: 11.205

6.  An effective coarse-grained model for biological simulations: recent refinements and validations.

Authors:  Spyridon Vicatos; Anna Rychkova; Shayantani Mukherjee; Arieh Warshel
Journal:  Proteins       Date:  2014-07

7.  Arginine side chain interactions and the role of arginine as a gating charge carrier in voltage sensitive ion channels.

Authors:  Craig T Armstrong; Philip E Mason; J L Ross Anderson; Christopher E Dempsey
Journal:  Sci Rep       Date:  2016-02-22       Impact factor: 4.379

Review 8.  Essay on Biomembrane Structure.

Authors:  Christoph Gerle
Journal:  J Membr Biol       Date:  2019-03-15       Impact factor: 1.843

9.  An emerging consensus on voltage-dependent gating from computational modeling and molecular dynamics simulations.

Authors:  Ernesto Vargas; Vladimir Yarov-Yarovoy; Fatemeh Khalili-Araghi; William A Catterall; Michael L Klein; Mounir Tarek; Erik Lindahl; Klaus Schulten; Eduardo Perozo; Francisco Bezanilla; Benoît Roux
Journal:  J Gen Physiol       Date:  2012-12       Impact factor: 4.086

10.  Direct evidence of conformational changes associated with voltage gating in a voltage sensor protein by time-resolved X-ray/neutron interferometry.

Authors:  Andrey Y Tronin; C Erik Nordgren; Joseph W Strzalka; Ivan Kuzmenko; David L Worcester; Valeria Lauter; J Alfredo Freites; Douglas J Tobias; J Kent Blasie
Journal:  Langmuir       Date:  2014-04-16       Impact factor: 3.882

  10 in total

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