Literature DB >> 12788766

Incidence and diversity of microorganisms within the walls of an active deep-sea sulfide chimney.

Matthew O Schrenk1, Deborah S Kelley, John R Delaney, John A Baross.   

Abstract

A large, intact sulfide chimney, designated Finn, was recovered from the Mothra Vent Field on the Juan de Fuca Ridge in 1998. Finn was venting 302 degrees C fluids on the seafloor and contained complex mineralogical zones surrounding a large open central conduit. Examination of microorganisms within these zones, followed by community analysis with oligonucleotide probes, showed that there were variations in the abundance and diversity of eubacteria and archaea from the exterior to the interior of the chimney. The microbial abundance based upon epifluorescence microscopy and quantitative fatty acid analyses varied from >10(8) cells/g of sulfide 2 to 10 cm within the chimney wall to <10(5) cells/g in interior zones. Direct microscopic observation indicated that microorganisms were attached to mineral surfaces throughout the structure. Whole-cell hybridization results revealed that there was a transition from a mixed community of eubacteria and archaea near the cool exterior of the chimney to primarily archaea near the warm interior. Archaeal diversity was examined in three zones of Finn by cloning and sequencing of the 16S rRNA gene. The majority of sequences from the exterior of the chimney were related to marine group I of the Crenarchaeota and uncultured Euryarchaeota from benthic marine environments. In contrast, clone libraries from interior regions of the chimney contained sequences closely related to methanogens, Thermococcales, and Archaeoglobales, in addition to uncultured crenarchaeal phylotypes obtained from deep subsurface sites. These observations of microbial communities within an active hydrothermal chimney provide insight into the microbial ecology within such structures and may facilitate follow-up exploration into expanding the known upper temperature limits of life.

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Year:  2003        PMID: 12788766      PMCID: PMC161516          DOI: 10.1128/AEM.69.6.3580-3592.2003

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  40 in total

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Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

Review 2.  Energetics of overall metabolic reactions of thermophilic and hyperthermophilic Archaea and bacteria.

Authors:  J P Amend; E L Shock
Journal:  FEMS Microbiol Rev       Date:  2001-04       Impact factor: 16.408

3.  Genetic diversity of archaea in deep-sea hydrothermal vent environments.

Authors:  K Takai; K Horikoshi
Journal:  Genetics       Date:  1999-08       Impact factor: 4.562

4.  Population structure and phylogenetic characterization of marine benthic Archaea in deep-sea sediments.

Authors:  C Vetriani; H W Jannasch; B J MacGregor; D A Stahl; A L Reysenbach
Journal:  Appl Environ Microbiol       Date:  1999-10       Impact factor: 4.792

5.  Palaeococcus ferrophilus gen. nov., sp. nov., a barophilic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney.

Authors:  K Takai; A Sugai; T Itoh; K Horikoshi
Journal:  Int J Syst Evol Microbiol       Date:  2000-03       Impact factor: 2.747

6.  Simultaneous direct counting of total and specific microbial cells in seawater, using a deep-sea microbe as target.

Authors:  A Maruyama; M Sunamura
Journal:  Appl Environ Microbiol       Date:  2000-05       Impact factor: 4.792

7.  Bacterial and archaeal populations associated with freshwater ferromanganous micronodules and sediments.

Authors:  L Y Stein; M T La Duc; T J Grundl; K H Nealson
Journal:  Environ Microbiol       Date:  2001-01       Impact factor: 5.491

8.  A novel microbial habitat in the mid-ocean ridge subseafloor.

Authors:  M Summit; J A Baross
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-27       Impact factor: 11.205

9.  Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent.

Authors:  A L Reysenbach; K Longnecker; J Kirshtein
Journal:  Appl Environ Microbiol       Date:  2000-09       Impact factor: 4.792

10.  An archaeal iron-oxidizing extreme acidophile important in acid mine drainage.

Authors:  K J Edwards; P L Bond; T M Gihring; J F Banfield
Journal:  Science       Date:  2000-03-10       Impact factor: 47.728

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  73 in total

1.  Geochemical and microbiological evidence for a hydrogen-based, hyperthermophilic subsurface lithoautotrophic microbial ecosystem (HyperSLiME) beneath an active deep-sea hydrothermal field.

Authors:  Ken Takai; Toshitaka Gamo; Urumu Tsunogai; Noriko Nakayama; Hisako Hirayama; Kenneth H Nealson; Koki Horikoshi
Journal:  Extremophiles       Date:  2004-04-09       Impact factor: 2.395

2.  Spatial distribution of viruses associated with planktonic and attached microbial communities in hydrothermal environments.

Authors:  Yukari Yoshida-Takashima; Takuro Nunoura; Hiromi Kazama; Takuroh Noguchi; Kazuhiro Inoue; Hironori Akashi; Toshiro Yamanaka; Tomohiro Toki; Masahiro Yamamoto; Yasuo Furushima; Yuichiro Ueno; Hiroyuki Yamamoto; Ken Takai
Journal:  Appl Environ Microbiol       Date:  2011-12-30       Impact factor: 4.792

3.  Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries.

Authors:  Wei Xie; Fengping Wang; Lei Guo; Zeling Chen; Stefan M Sievert; Jun Meng; Guangrui Huang; Yuxin Li; Qingyu Yan; Shan Wu; Xin Wang; Shangwu Chen; Guangyuan He; Xiang Xiao; Anlong Xu
Journal:  ISME J       Date:  2010-10-07       Impact factor: 10.302

4.  Hydrogen and energy flow as "sensed" by molecular genetics.

Authors:  Kenneth H Nealson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-07       Impact factor: 11.205

5.  Continuous enrichment culture and molecular monitoring to investigate the microbial diversity of thermophiles inhabiting deep-sea hydrothermal ecosystems.

Authors:  Anne Postec; Laurent Urios; Françoise Lesongeur; Bernard Ollivier; Joël Querellou; Anne Godfroy
Journal:  Curr Microbiol       Date:  2005-02-08       Impact factor: 2.188

6.  Stratified communities of active Archaea in deep marine subsurface sediments.

Authors:  Ketil B Sørensen; Andreas Teske
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

7.  16S rRNA phylogenetic investigation of the candidate division "Korarchaeota".

Authors:  Thomas A Auchtung; Cristina D Takacs-Vesbach; Colleen M Cavanaugh
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

8.  Continuous enrichment culturing of thermophiles under sulfate and nitrate-reducing conditions and at deep-sea hydrostatic pressures.

Authors:  J L Houghton; W E Seyfried; A B Banta; A-L Reysenbach
Journal:  Extremophiles       Date:  2007-01-13       Impact factor: 2.395

9.  A korarchaeal genome reveals insights into the evolution of the Archaea.

Authors:  James G Elkins; Mircea Podar; David E Graham; Kira S Makarova; Yuri Wolf; Lennart Randau; Brian P Hedlund; Céline Brochier-Armanet; Victor Kunin; Iain Anderson; Alla Lapidus; Eugene Goltsman; Kerrie Barry; Eugene V Koonin; Phil Hugenholtz; Nikos Kyrpides; Gerhard Wanner; Paul Richardson; Martin Keller; Karl O Stetter
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-05       Impact factor: 11.205

10.  Culture dependent and independent analyses of 16S rRNA and ATP citrate lyase genes: a comparison of microbial communities from different black smoker chimneys on the Mid-Atlantic Ridge.

Authors:  James W Voordeckers; My H Do; Michael Hügler; Vivian Ko; Stefan M Sievert; Costantino Vetriani
Journal:  Extremophiles       Date:  2008-06-05       Impact factor: 2.395

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