Literature DB >> 16820509

16S rRNA phylogenetic investigation of the candidate division "Korarchaeota".

Thomas A Auchtung1, Cristina D Takacs-Vesbach, Colleen M Cavanaugh.   

Abstract

The environmental distribution and phylogeny of "Korarchaeota," a proposed ancient archaeal division, was investigated by using the 16S rRNA gene framework. Korarchaeota-specific primers were designed based on previously published sequences and used to screen a variety of environments. Korarchaeota 16S rRNA genes were amplified exclusively from high temperature Yellowstone National Park hot springs and a 9 degrees N East Pacific Rise deep-sea hydrothermal vent. Phylogenetic analyses of these and all available sequences suggest that Korarchaeota exhibit a high level of endemicity.

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Substances：

Year:  2006        PMID： 16820509      PMCID： PMC1489347          DOI： 10.1128/AEM.00052-06

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  31 in total

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7.  Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment.

Authors:  S M Barns; R E Fundyga; M W Jeffries; N R Pace
Journal:  Proc Natl Acad Sci U S A       Date:  1994-03-01       Impact factor: 11.205

8.  Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity

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  10 in total

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Authors:  Thomas A Auchtung; Galina Shyndriayeva; Colleen M Cavanaugh
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6.  PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets.

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7.  Korarchaeota diversity, biogeography, and abundance in Yellowstone and Great Basin hot springs and ecological niche modeling based on machine learning.

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  10 in total

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