Literature DB >> 15309563

Geochemical and microbiological evidence for a hydrogen-based, hyperthermophilic subsurface lithoautotrophic microbial ecosystem (HyperSLiME) beneath an active deep-sea hydrothermal field.

Ken Takai1, Toshitaka Gamo, Urumu Tsunogai, Noriko Nakayama, Hisako Hirayama, Kenneth H Nealson, Koki Horikoshi.   

Abstract

Subsurface microbial communities supported by geologically and abiologically derived hydrogen and carbon dioxide from the Earth's interior are of great interest, not only with regard to the nature of primitive life on Earth, but as potential analogs for extraterrestrial life. Here, for the first time, we present geochemical and microbiological evidence pointing to the existence of hyperthermophilic subsurface lithoautotrophic microbial ecosystem (HyperSLiME) dominated by hyperthermophilic methanogens beneath an active deep-sea hydrothermal field in the Central Indian Ridge. Geochemical and isotopic analyses of gaseous components in the hydrothermal fluids revealed heterogeneity of both concentration and carbon isotopic compositions of methane between the main hydrothermal vent (0.08 mM and -13.8 per thousand PDB, respectively) and the adjacent divergent vent site (0.2 mM and -18.5 per thousand PDB, respectively), representing potential subsurface microbial methanogenesis, at least in the divergent vent emitting more 13C-depleted methane. Extremely high abundance of magmatic energy sources such as hydrogen (2.5 mM) in the fluids also encourages a hydrogen-based, lithoautotrophic microbial activity. Both cultivation and cultivation-independent molecular analyses suggested the predominance of Methanococcales members in the superheated hydrothermal emissions and chimney interiors along with the other major microbial components of Thermococcales members. These results imply that a HyperSLiME, consisting of methanogens and fermenters, occurs in this tectonically active subsurface zone, strongly supporting the existence of hydrogen-driven subsurface microbial communities.

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Year:  2004        PMID: 15309563     DOI: 10.1007/s00792-004-0386-3

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  30 in total

1.  The RDP (Ribosomal Database Project) continues.

Authors:  B L Maidak; J R Cole; T G Lilburn; C T Parker; P R Saxman; J M Stredwick; G M Garrity; B Li; G J Olsen; S Pramanik; T M Schmidt; J M Tiedje
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Genetic diversity of archaea in deep-sea hydrothermal vent environments.

Authors:  K Takai; K Horikoshi
Journal:  Genetics       Date:  1999-08       Impact factor: 4.562

3.  Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes.

Authors:  K Takai; K Horikoshi
Journal:  Appl Environ Microbiol       Date:  2000-11       Impact factor: 4.792

4.  Distribution of archaea in a black smoker chimney structure.

Authors:  K Takai; T Komatsu; F Inagaki; K Horikoshi
Journal:  Appl Environ Microbiol       Date:  2001-08       Impact factor: 4.792

5.  Deep-sea smokers: windows to a subsurface biosphere?

Authors:  J W Deming; J A Baross
Journal:  Geochim Cosmochim Acta       Date:  1993-07       Impact factor: 5.010

6.  Shifts in archaeal communities associated with lithological and geochemical variations in subsurface Cretaceous rock.

Authors:  Ken Takai; Melanie R Mormile; James P McKinley; Fred J Brockman; William E Holben; William P Kovacik; Jim K Fredrickson
Journal:  Environ Microbiol       Date:  2003-04       Impact factor: 5.491

7.  Particulate DNA in smoker fluids: evidence for existence of microbial populations in hot hydrothermal systems.

Authors:  W L Straube; J W Deming; C C Somerville; R R Colwell; J A Baross
Journal:  Appl Environ Microbiol       Date:  1990-05       Impact factor: 4.792

8.  Thermosipho japonicus sp. nov., an extremely thermophilic bacterium isolated from a deep-sea hydrothermal vent in Japan.

Authors:  K Takai; K Horikoshi
Journal:  Extremophiles       Date:  2000-02       Impact factor: 2.395

9.  Specific ribosomal DNA sequences from diverse environmental settings correlate with experimental contaminants.

Authors:  M A Tanner; B M Goebel; M A Dojka; N R Pace
Journal:  Appl Environ Microbiol       Date:  1998-08       Impact factor: 4.792

10.  Deferribacter desulfuricans sp. nov., a novel sulfur-, nitrate- and arsenate-reducing thermophile isolated from a deep-sea hydrothermal vent.

Authors:  Ken Takai; Hideki Kobayashi; Kenneth H Nealson; Koki Horikoshi
Journal:  Int J Syst Evol Microbiol       Date:  2003-05       Impact factor: 2.747

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  57 in total

1.  16S rRNA phylogenetic analysis and quantification of Korarchaeota indigenous to the hot springs of Kamchatka, Russia.

Authors:  Thomas A Auchtung; Galina Shyndriayeva; Colleen M Cavanaugh
Journal:  Extremophiles       Date:  2010-12-12       Impact factor: 2.395

2.  Survival and growth of two heterotrophic hydrothermal vent archaea, Pyrococcus strain GB-D and Thermococcus fumicolans, under low pH and high sulfide concentrations in combination with high temperature and pressure regimes.

Authors:  Virginia P Edgcomb; Stephen J Molyneaux; Simone Böer; Carl O Wirsen; Mak Saito; Michael S Atkins; Karen Lloyd; Andreas Teske
Journal:  Extremophiles       Date:  2006-11-17       Impact factor: 2.395

3.  Novel chemoautotrophic endosymbiosis between a member of the Epsilonproteobacteria and the hydrothermal-vent gastropod Alviniconcha aff. hessleri (Gastropoda: Provannidae) from the Indian Ocean.

Authors:  Yohey Suzuki; Takenori Sasaki; Masae Suzuki; Yuichi Nogi; Tetsuya Miwa; Ken Takai; Kenneth H Nealson; Koki Horikoshi
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

4.  Hydrogen and energy flow as "sensed" by molecular genetics.

Authors:  Kenneth H Nealson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-07       Impact factor: 11.205

5.  Enzymatic and genetic characterization of carbon and energy metabolisms by deep-sea hydrothermal chemolithoautotrophic isolates of Epsilonproteobacteria.

Authors:  Ken Takai; Barbara J Campbell; S Craig Cary; Masae Suzuki; Hanako Oida; Takuro Nunoura; Hisako Hirayama; Satoshi Nakagawa; Yohey Suzuki; Fumio Inagaki; Koki Horikoshi
Journal:  Appl Environ Microbiol       Date:  2005-11       Impact factor: 4.792

6.  16S rRNA phylogenetic investigation of the candidate division "Korarchaeota".

Authors:  Thomas A Auchtung; Cristina D Takacs-Vesbach; Colleen M Cavanaugh
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

Review 7.  Recent developments in the thermophilic microbiology of deep-sea hydrothermal vents.

Authors:  Margarita L Miroshnichenko; Elizaveta A Bonch-Osmolovskaya
Journal:  Extremophiles       Date:  2006-01-18       Impact factor: 2.395

8.  Selective phylogenetic analysis targeted at 16S rRNA genes of thermophiles and hyperthermophiles in deep-subsurface geothermal environments.

Authors:  Hiroyuki Kimura; Maki Sugihara; Kenji Kato; Satoshi Hanada
Journal:  Appl Environ Microbiol       Date:  2006-01       Impact factor: 4.792

9.  Continuous enrichment culturing of thermophiles under sulfate and nitrate-reducing conditions and at deep-sea hydrostatic pressures.

Authors:  J L Houghton; W E Seyfried; A B Banta; A-L Reysenbach
Journal:  Extremophiles       Date:  2007-01-13       Impact factor: 2.395

10.  Cell proliferation at 122 degrees C and isotopically heavy CH4 production by a hyperthermophilic methanogen under high-pressure cultivation.

Authors:  Ken Takai; Kentaro Nakamura; Tomohiro Toki; Urumu Tsunogai; Masayuki Miyazaki; Junichi Miyazaki; Hisako Hirayama; Satoshi Nakagawa; Takuro Nunoura; Koki Horikoshi
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-29       Impact factor: 11.205

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