Literature DB >> 22210205

Spatial distribution of viruses associated with planktonic and attached microbial communities in hydrothermal environments.

Yukari Yoshida-Takashima1, Takuro Nunoura, Hiromi Kazama, Takuroh Noguchi, Kazuhiro Inoue, Hironori Akashi, Toshiro Yamanaka, Tomohiro Toki, Masahiro Yamamoto, Yasuo Furushima, Yuichiro Ueno, Hiroyuki Yamamoto, Ken Takai.   

Abstract

Viruses play important roles in marine surface ecosystems, but little is known about viral ecology and virus-mediated processes in deep-sea hydrothermal microbial communities. In this study, we examined virus-like particle (VLP) abundances in planktonic and attached microbial communities, which occur in physical and chemical gradients in both deep and shallow submarine hydrothermal environments (mixing waters between hydrothermal fluids and ambient seawater and dense microbial communities attached to chimney surface areas or macrofaunal bodies and colonies). We found that viruses were widely distributed in a variety of hydrothermal microbial habitats, with the exception of the interior parts of hydrothermal chimney structures. The VLP abundance and VLP-to-prokaryote ratio (VPR) in the planktonic habitats increased as the ratio of hydrothermal fluid to mixing water increased. On the other hand, the VLP abundance in attached microbial communities was significantly and positively correlated with the whole prokaryotic abundance; however, the VPRs were always much lower than those for the surrounding hydrothermal waters. This is the first report to show VLP abundance in the attached microbial communities of submarine hydrothermal environments, which presented VPR values significantly lower than those in planktonic microbial communities reported before. These results suggested that viral lifestyles (e.g., lysogenic prevalence) and virus interactions with prokaryotes are significantly different among the planktonic and attached microbial communities that are developing in the submarine hydrothermal environments.

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Year:  2011        PMID: 22210205      PMCID: PMC3294471          DOI: 10.1128/AEM.06491-11

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  58 in total

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Authors:  R Danovaro; A Dell'Anno; A Trucco; M Serresi; S Vanucci
Journal:  Appl Environ Microbiol       Date:  2001-03       Impact factor: 4.792

2.  Distribution of archaea in a black smoker chimney structure.

Authors:  K Takai; T Komatsu; F Inagaki; K Horikoshi
Journal:  Appl Environ Microbiol       Date:  2001-08       Impact factor: 4.792

3.  Archaea in coastal marine environments.

Authors:  E F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-15       Impact factor: 11.205

Review 4.  Feast and famine--microbial life in the deep-sea bed.

Authors:  Bo Barker Jørgensen; Antje Boetius
Journal:  Nat Rev Microbiol       Date:  2007-10       Impact factor: 60.633

5.  Lysogenic virus-host interactions predominate at deep-sea diffuse-flow hydrothermal vents.

Authors:  Shannon J Williamson; S Craig Cary; Kurt E Williamson; Rebekah R Helton; Shellie R Bench; Danielle Winget; K Eric Wommack
Journal:  ISME J       Date:  2008-08-21       Impact factor: 10.302

6.  Phylogenetic composition of bacterioplankton assemblages from the Arctic Ocean.

Authors:  Nasreen Bano; James T Hollibaugh
Journal:  Appl Environ Microbiol       Date:  2002-02       Impact factor: 4.792

7.  Bacteriophage T4 development depends on the physiology of its host Escherichia coli.

Authors:  Hilla Hadas; Monica Einav; Itzhak Fishov; Arieh Zaritsky
Journal:  Microbiology (Reading)       Date:  1997-01       Impact factor: 2.777

8.  Susceptibility of Staphylococcus epidermidis planktonic cells and biofilms to the lytic action of staphylococcus bacteriophage K.

Authors:  N Cerca; R Oliveira; J Azeredo
Journal:  Lett Appl Microbiol       Date:  2007-09       Impact factor: 2.858

9.  Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts.

Authors:  Matthew B Sullivan; Debbie Lindell; Jessica A Lee; Luke R Thompson; Joseph P Bielawski; Sallie W Chisholm
Journal:  PLoS Biol       Date:  2006-07       Impact factor: 8.029

Review 10.  Exploring prokaryotic diversity in the genomic era.

Authors:  Philip Hugenholtz
Journal:  Genome Biol       Date:  2002-01-29       Impact factor: 13.583

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  14 in total

1.  Defining boundaries for the distribution of microbial communities beneath the sediment-buried, hydrothermally active seafloor.

Authors:  Katsunori Yanagawa; Akira Ijiri; Anja Breuker; Sanae Sakai; Youko Miyoshi; Shinsuke Kawagucci; Takuroh Noguchi; Miho Hirai; Axel Schippers; Jun-Ichiro Ishibashi; Yoshihiro Takaki; Michinari Sunamura; Tetsuro Urabe; Takuro Nunoura; Ken Takai
Journal:  ISME J       Date:  2016-10-18       Impact factor: 10.302

2.  Genome sequence of a novel deep-sea vent epsilonproteobacterial phage provides new insight into the co-evolution of Epsilonproteobacteria and their phages.

Authors:  Yukari Yoshida-Takashima; Yoshihiro Takaki; Shigeru Shimamura; Takuro Nunoura; Ken Takai
Journal:  Extremophiles       Date:  2013-03-20       Impact factor: 2.395

3.  Microbial community stratification controlled by the subseafloor fluid flow and geothermal gradient at the Iheya North hydrothermal field in the Mid-Okinawa Trough (Integrated Ocean Drilling Program Expedition 331).

Authors:  Katsunori Yanagawa; Anja Breuker; Axel Schippers; Manabu Nishizawa; Akira Ijiri; Miho Hirai; Yoshihiro Takaki; Michinari Sunamura; Tetsuro Urabe; Takuro Nunoura; Ken Takai
Journal:  Appl Environ Microbiol       Date:  2014-07-25       Impact factor: 4.792

4.  Diversity of methane-cycling archaea in hydrothermal sediment investigated by general and group-specific PCR primers.

Authors:  Mark A Lever; Andreas P Teske
Journal:  Appl Environ Microbiol       Date:  2015-02       Impact factor: 4.792

5.  Genomic characterization of a temperate phage of the psychrotolerant deep-sea bacterium Aurantimonas sp.

Authors:  Mitsuhiro Yoshida; Yukari Yoshida-Takashima; Takuro Nunoura; Ken Takai
Journal:  Extremophiles       Date:  2014-10-30       Impact factor: 2.395

Review 6.  The microbiomes of deep-sea hydrothermal vents: distributed globally, shaped locally.

Authors:  Gregory J Dick
Journal:  Nat Rev Microbiol       Date:  2019-05       Impact factor: 60.633

7.  Physiological and genomic features of a novel sulfur-oxidizing gammaproteobacterium belonging to a previously uncultivated symbiotic lineage isolated from a hydrothermal vent.

Authors:  Takuro Nunoura; Yoshihiro Takaki; Hiromi Kazama; Jungo Kakuta; Shigeru Shimamura; Hiroko Makita; Miho Hirai; Masayuki Miyazaki; Ken Takai
Journal:  PLoS One       Date:  2014-08-18       Impact factor: 3.240

8.  Pathobiomes Differ between Two Diseases Affecting Reef Building Coralline Algae.

Authors:  Anne-Leila Meistertzheim; Maggy M Nugues; Gaëlle Quéré; Pierre E Galand
Journal:  Front Microbiol       Date:  2017-09-01       Impact factor: 5.640

9.  Richness and composition of niche-assembled viral pathogen communities.

Authors:  Eric W Seabloom; Elizabeth T Borer; Christelle Lacroix; Charles E Mitchell; Alison G Power
Journal:  PLoS One       Date:  2013-02-26       Impact factor: 3.240

10.  The first microbiological contamination assessment by deep-sea drilling and coring by the D/V Chikyu at the Iheya North hydrothermal field in the Mid-Okinawa Trough (IODP Expedition 331).

Authors:  Katsunori Yanagawa; Takuro Nunoura; Sean M McAllister; Miho Hirai; Anja Breuker; Leah Brandt; Christopher H House; Craig L Moyer; Jean-Louis Birrien; Kan Aoike; Michinari Sunamura; Tetsuro Urabe; Michael J Mottl; Ken Takai
Journal:  Front Microbiol       Date:  2013-11-08       Impact factor: 5.640

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