Literature DB >> 12769287

Recent progress in chromosome painting of Arabidopsis and related species.

Martin A Lysak1, Ales Pecinka, Ingo Schubert.   

Abstract

This paper reports on state-of-the-art achievements of chromosome painting in Arabidopsis thaliana (2n = 10). Arabidopsis chromosomes 1, 2 and 4 were painted using chromosome-specific BAC contigs. We consider technical aspects of the painting approach and document major applications, such as the tracing of Arabidopsis chromosomes as interphase chromosome territories and during mitotic and meiotic cell cycles as well as comparative chromosome painting in related species. This is the first report of successful interspecific chromosome painting in plants. The evolutionary history of chromosomes homeologous to Arabidopsis chromosome 4 was reconstructed by hybridization of chromosome-4-specific painting probes to karyotypes of Brassicaceae species with x = 8 chromosomes. Future perspectives of chromosome painting in A. thaliana and its wild relatives are outlined.

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Year:  2003        PMID: 12769287     DOI: 10.1023/a:1022879608152

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  23 in total

1.  Molecular systematics of the Brassicaceae: evidence from coding plastidic matK and nuclear Chs sequences.

Authors:  M Koch; B Haubold; T Mitchell-Olds
Journal:  Am J Bot       Date:  2001-03       Impact factor: 3.844

2.  Arrangements of macro- and microchromosomes in chicken cells.

Authors:  F A Habermann; M Cremer; J Walter; G Kreth; J von Hase; K Bauer; J Wienberg; C Cremer; T Cremer; I Solovei
Journal:  Chromosome Res       Date:  2001       Impact factor: 5.239

Review 3.  Chromosome painting in plants.

Authors:  I Schubert; P F Fransz; J Fuchs; J H de Jong
Journal:  Methods Cell Sci       Date:  2001

4.  Chromosome painting in Arabidopsis thaliana.

Authors:  M A Lysak; P F Fransz; H B Ali; I Schubert
Journal:  Plant J       Date:  2001-12       Impact factor: 6.417

5.  FISH-mapping of rDNAs and Arabidopsis BACs on pachytene complements of selected Brassicas.

Authors:  Piotr A Ziolkowski; Jan Sadowski
Journal:  Genome       Date:  2002-02       Impact factor: 2.166

6.  Chromosome 'painting' in plants - a feasible technique?

Authors:  J Fuchs; A Houben; A Brandes; I Schubert
Journal:  Chromosoma       Date:  1996       Impact factor: 4.316

7.  Comparative genome analysis reveals extensive conservation of genome organisation for Arabidopsis thaliana and Capsella rubella.

Authors:  A Acarkan; M Rossberg; M Koch; R Schmidt
Journal:  Plant J       Date:  2000-07       Impact factor: 6.417

8.  Comparative fluorescence in situ hybridization mapping of a 431-kb Arabidopsis thaliana bacterial artificial chromosome contig reveals the role of chromosomal duplications in the expansion of the Brassica rapa genome.

Authors:  S A Jackson; Z Cheng; M L Wang; H M Goodman; J Jiang
Journal:  Genetics       Date:  2000-10       Impact factor: 4.562

9.  Flow cytometric analysis of the chromosomes and stability of a wheat cell-culture line.

Authors:  T Schwarzacher; M L Wang; A R Leitch; G Moore; J S Heslop-Harrison; N Miller
Journal:  Theor Appl Genet       Date:  1997-01       Impact factor: 5.699

10.  Cytogenetics for the model system Arabidopsis thaliana.

Authors:  P Fransz; S Armstrong; C Alonso-Blanco; T C Fischer; R A Torres-Ruiz; G Jones
Journal:  Plant J       Date:  1998-03       Impact factor: 6.417

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  26 in total

Review 1.  From early homologue recognition to synaptonemal complex formation.

Authors:  Denise Zickler
Journal:  Chromosoma       Date:  2006-03-29       Impact factor: 4.316

2.  Chromosomal localization of 5S and 18S rDNA in five species of subgenus Strobus and their implications for genome evolution of Pinus.

Authors:  Qing Cai; Daming Zhang; Zhan-Lin Liu; Xiao-Ru Wang
Journal:  Ann Bot       Date:  2006-02-15       Impact factor: 4.357

3.  Light-regulated gene repositioning in Arabidopsis.

Authors:  Chun-Miao Feng; Yongjian Qiu; Elise K Van Buskirk; Emily J Yang; Meng Chen
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

4.  Chromosomal phylogeny and karyotype evolution in x=7 crucifer species (Brassicaceae).

Authors:  Terezie Mandáková; Martin A Lysak
Journal:  Plant Cell       Date:  2008-10-03       Impact factor: 11.277

5.  The large genome size variation in the Hesperis clade was shaped by the prevalent proliferation of DNA repeats and rarer genome downsizing.

Authors:  Petra Hloušková; Terezie Mandáková; Milan Pouch; Pavel Trávníček; Martin A Lysak
Journal:  Ann Bot       Date:  2019-08-02       Impact factor: 4.357

6.  Centromere locations and associated chromosome rearrangements in Arabidopsis lyrata and A. thaliana.

Authors:  Akira Kawabe; Bengt Hansson; Jenny Hagenblad; Alan Forrest; Deborah Charlesworth
Journal:  Genetics       Date:  2006-04-28       Impact factor: 4.562

7.  Chromosome territory arrangement and homologous pairing in nuclei of Arabidopsis thaliana are predominantly random except for NOR-bearing chromosomes.

Authors:  Ales Pecinka; Veit Schubert; Armin Meister; Gregor Kreth; Marco Klatte; Martin A Lysak; Jörg Fuchs; Ingo Schubert
Journal:  Chromosoma       Date:  2004-10-09       Impact factor: 4.316

8.  Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize.

Authors:  Akio Kato; Jonathan C Lamb; James A Birchler
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-01       Impact factor: 11.205

9.  Genome sequence comparison of Col and Ler lines reveals the dynamic nature of Arabidopsis chromosomes.

Authors:  Piotr A Ziolkowski; Grzegorz Koczyk; Lukasz Galganski; Jan Sadowski
Journal:  Nucleic Acids Res       Date:  2009-03-21       Impact factor: 16.971

10.  3D fluorescent in situ hybridization using Arabidopsis leaf cryosections and isolated nuclei.

Authors:  Leïla Tirichine; Philippe Andrey; Eric Biot; Yves Maurin; Valérie Gaudin
Journal:  Plant Methods       Date:  2009-08-03       Impact factor: 4.993

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