Literature DB >> 12760826

The Comparative Toxicogenomics Database (CTD).

Carolyn J Mattingly1, Glenn T Colby, John N Forrest, James L Boyer.   

Abstract

The Mount Desert Island Biological Laboratory in Salsbury Cove, Maine, USA, is developing the Comparative Toxicogenomics Database (CTD), a community-supported genomic resource devoted to genes and proteins of human toxicologic significance. CTD will be the first publicly available database to a) provide annotated associations among genes, proteins, references, and toxic agents, with a focus on annotating data from aquatic and mammalian organisms; b) include nucleotide and protein sequences from diverse species; c) offer a range of analysis tools for customized comparative studies; and d) provide information to investigators on available molecular reagents. This combination of features will facilitate cross-species comparisons of toxicologically significant genes and proteins. These comparisons will promote understanding of molecular evolution, the significance of conserved sequences, the genetic basis of variable sensitivity to environmental agents, and the complex interactions between the environment and human health. CTD is currently under development, and the planned scope and functions of the database are described herein. The intent of this report is to invite community participation in the development of CTD to ensure that it will be a valuable resource for environmental health, molecular biology, and toxicology research.

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Year:  2003        PMID: 12760826      PMCID: PMC1241500          DOI: 10.1289/ehp.6028

Source DB:  PubMed          Journal:  Environ Health Perspect        ISSN: 0091-6765            Impact factor:   9.031


  27 in total

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Review 3.  Defining the molecular and cellular basis of toxicity using comparative models.

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Journal:  Science       Date:  2002-07-25       Impact factor: 47.728

6.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
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7.  Primary structure and functional expression of a cDNA encoding the thiazide-sensitive, electroneutral sodium-chloride cotransporter.

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Review 8.  2,3,7,8-tetrachlorodibenzo-p-dioxin and related halogenated aromatic hydrocarbons: examination of the mechanism of toxicity.

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  65 in total

Review 1.  The Comparative Toxicogenomics Database (CTD): a resource for comparative toxicological studies.

Authors:  C J Mattingly; M C Rosenstein; G T Colby; J N Forrest; J L Boyer
Journal:  J Exp Zool A Comp Exp Biol       Date:  2006-09-01

Review 2.  Practical approaches to adverse outcome pathway development and weight-of-evidence evaluation as illustrated by ecotoxicological case studies.

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7.  Assessment of patient clinical descriptions and pathogenic variants from gene panel sequences in the CAGI-5 intellectual disability challenge.

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9.  Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data.

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