Literature DB >> 12754495

Structural basis for orthogonal tRNA specificities of tyrosyl-tRNA synthetases for genetic code expansion.

Takatsugu Kobayashi1, Osamu Nureki, Ryuichiro Ishitani, Anna Yaremchuk, Michael Tukalo, Stephen Cusack, Kensaku Sakamoto, Shigeyuki Yokoyama.   

Abstract

The archaeal/eukaryotic tyrosyl-tRNA synthetase (TyrRS)-tRNA(Tyr) pairs do not cross-react with their bacterial counterparts. This 'orthogonal' condition is essential for using the archaeal pair to expand the bacterial genetic code. In this study, the structure of the Methanococcus jannaschii TyrRS-tRNA(Tyr)-L-tyrosine complex, solved at a resolution of 1.95 A, reveals that this archaeal TyrRS strictly recognizes the C1-G72 base pair, whereas the bacterial TyrRS recognizes the G1-C72 in a different manner using different residues. These diverse tRNA recognition modes form the basis for the orthogonality. The common tRNA(Tyr) identity determinants (the discriminator, A73 and the anticodon residues) are also recognized in manners different from those of the bacterial TyrRS. Based on this finding, we created a mutant TyrRS that aminoacylates the amber suppressor tRNA with C34 65 times more efficiently than does the wild-type enzyme.

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Year:  2003        PMID: 12754495     DOI: 10.1038/nsb934

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  74 in total

Review 1.  On the evolution of structure in aminoacyl-tRNA synthetases.

Authors:  Patrick O'Donoghue; Zaida Luthey-Schulten
Journal:  Microbiol Mol Biol Rev       Date:  2003-12       Impact factor: 11.056

2.  Improved Incorporation of Noncanonical Amino Acids by an Engineered tRNA(Tyr) Suppressor.

Authors:  Benjamin J Rauch; Joseph J Porter; Ryan A Mehl; John J Perona
Journal:  Biochemistry       Date:  2016-01-08       Impact factor: 3.162

3.  Evolution of the genetic triplet code via two types of doublet codons.

Authors:  Huan-Lin Wu; Stefan Bagby; Jean M H van den Elsen
Journal:  J Mol Evol       Date:  2005-07-19       Impact factor: 2.395

4.  An evolved aminoacyl-tRNA synthetase with atypical polysubstrate specificity.

Authors:  Douglas D Young; Travis S Young; Michael Jahnz; Insha Ahmad; Glen Spraggon; Peter G Schultz
Journal:  Biochemistry       Date:  2011-02-01       Impact factor: 3.162

5.  Two conformations of a crystalline human tRNA synthetase-tRNA complex: implications for protein synthesis.

Authors:  Xiang-Lei Yang; Francella J Otero; Karla L Ewalt; Jianming Liu; Manal A Swairjo; Caroline Köhrer; Uttam L RajBhandary; Robert J Skene; Duncan E McRee; Paul Schimmel
Journal:  EMBO J       Date:  2006-05-25       Impact factor: 11.598

6.  Mimivirus TyrRS: preliminary structural and functional characterization of the first amino-acyl tRNA synthetase found in a virus.

Authors:  Chantal Abergel; Sabine Chenivesse; Deborah Byrne; Karsten Suhre; Vincent Arondel; Jean-Michel Claverie
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-01-20

Review 7.  Incorporation of Non-Canonical Amino Acids.

Authors:  Lilia Leisle; Francis Valiyaveetil; Ryan A Mehl; Christopher A Ahern
Journal:  Adv Exp Med Biol       Date:  2015       Impact factor: 2.622

8.  Complete set of orthogonal 21st aminoacyl-tRNA synthetase-amber, ochre and opal suppressor tRNA pairs: concomitant suppression of three different termination codons in an mRNA in mammalian cells.

Authors:  Caroline Köhrer; Eric L Sullivan; Uttam L RajBhandary
Journal:  Nucleic Acids Res       Date:  2004-12-01       Impact factor: 16.971

9.  Rapid discovery and evolution of orthogonal aminoacyl-tRNA synthetase-tRNA pairs.

Authors:  Daniele Cervettini; Shan Tang; Stephen D Fried; Julian C W Willis; Louise F H Funke; Lucy J Colwell; Jason W Chin
Journal:  Nat Biotechnol       Date:  2020-04-13       Impact factor: 54.908

10.  Comparative structural dynamics of Tyrosyl-tRNA synthetase complexed with different substrates explored by molecular dynamics.

Authors:  Tong Li; Matheus Froeyen; Piet Herdewijn
Journal:  Eur Biophys J       Date:  2008-06-17       Impact factor: 1.733

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