Literature DB >> 16510997

Mimivirus TyrRS: preliminary structural and functional characterization of the first amino-acyl tRNA synthetase found in a virus.

Chantal Abergel1, Sabine Chenivesse, Deborah Byrne, Karsten Suhre, Vincent Arondel, Jean-Michel Claverie.   

Abstract

The amoeba-infecting Mimivirus is the largest known double-stranded DNA virus, with a 400 nm particle size, comparable to that of mycoplasma. The complete sequence of its 1.2 Mbp genome has recently been determined [Raoult et al. (2004), Science, 306, 1344-1350] and revealed numerous genes that were not expected to be found in a virus, such as genes encoding translation components, including 4-amino-acyl tRNA synthetases and homologues to various translation initiation, elongation and termination factors. A comprehensive structural and functional study of these Mimivirus gene products was initiated, as they may hold important clues about the origin of DNA viruses. Here, the first preliminary crystallographic and functional results obtained on one of these targets, Mimivirus TyrRS, are reported. Preliminary phasing was obtained using an original combination of homology modelling and normal mode analysis. Experimental evidence that Mimivirus tyrosyl tRNA synthetase recombinant gene product does indeed activate tyrosine is also presented.

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Year:  2005        PMID: 16510997      PMCID: PMC1952258          DOI: 10.1107/S174430910500062X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  13 in total

1.  DNA cloning using in vitro site-specific recombination.

Authors:  J L Hartley; G F Temple; M A Brasch
Journal:  Genome Res       Date:  2000-11       Impact factor: 9.043

2.  Implementation of molecular replacement in AMoRe.

Authors:  J Navaza
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-09-21

3.  A giant virus in amoebae.

Authors:  Bernard La Scola; Stéphane Audic; Catherine Robert; Liang Jungang; Xavier de Lamballerie; Michel Drancourt; Richard Birtles; Jean-Michel Claverie; Didier Raoult
Journal:  Science       Date:  2003-03-28       Impact factor: 47.728

4.  Structural genomics of highly conserved microbial genes of unknown function in search of new antibacterial targets.

Authors:  Chantal Abergel; Bruno Coutard; Deborah Byrne; Sabine Chenivesse; Jean-Baptiste Claude; Céline Deregnaucourt; Thierry Fricaux; Celine Gianesini-Boutreux; Sandra Jeudy; Régine Lebrun; Caroline Maza; Cédric Notredame; Olivier Poirot; Karsten Suhre; Majorie Varagnol; Jean-Michel Claverie
Journal:  J Struct Funct Genomics       Date:  2003

5.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

6.  The 1.2-megabase genome sequence of Mimivirus.

Authors:  Didier Raoult; Stéphane Audic; Catherine Robert; Chantal Abergel; Patricia Renesto; Hiroyuki Ogata; Bernard La Scola; Marie Suzan; Jean-Michel Claverie
Journal:  Science       Date:  2004-10-14       Impact factor: 47.728

7.  Interconversion of ATP binding and conformational free energies by tryptophanyl-tRNA synthetase: structures of ATP bound to open and closed, pre-transition-state conformations.

Authors:  Pascal Retailleau; Xin Huang; Yuhui Yin; Mei Hu; Violetta Weinreb; Patrice Vachette; Clemens Vonrhein; Gérard Bricogne; Pietro Roversi; Valentin Ilyin; Charles W Carter
Journal:  J Mol Biol       Date:  2003-01-03       Impact factor: 5.469

8.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

9.  Crystal structure of a human aminoacyl-tRNA synthetase cytokine.

Authors:  Xiang-Lei Yang; Robert J Skene; Duncan E McRee; Paul Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-11       Impact factor: 11.205

10.  Structural basis for orthogonal tRNA specificities of tyrosyl-tRNA synthetases for genetic code expansion.

Authors:  Takatsugu Kobayashi; Osamu Nureki; Ryuichiro Ishitani; Anna Yaremchuk; Michael Tukalo; Stephen Cusack; Kensaku Sakamoto; Shigeyuki Yokoyama
Journal:  Nat Struct Biol       Date:  2003-06
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  8 in total

1.  Acanthamoeba polyphaga mimivirus NDK: preliminary crystallographic analysis of the first viral nucleoside diphosphate kinase.

Authors:  Sandra Jeudy; Bruno Coutard; Régine Lebrun; Chantal Abergel
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-06-01

2.  Tyrosyl-tRNA synthetase: the first crystallization of a human mitochondrial aminoacyl-tRNA synthetase.

Authors:  Luc Bonnefond; Magali Frugier; Elodie Touzé; Bernard Lorber; Catherine Florentz; Richard Giegé; Joëlle Rudinger-Thirion; Claude Sauter
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-03-30

3.  The nucleoside diphosphate kinase from mimivirus: a peculiar affinity for deoxypyrimidine nucleotides.

Authors:  Sandra Jeudy; Jean-Michel Claverie; Chantal Abergel
Journal:  J Bioenerg Biomembr       Date:  2006-08       Impact factor: 2.945

4.  Structure of grouper iridovirus purine nucleoside phosphorylase.

Authors:  You-Na Kang; Yang Zhang; Paula W Allan; William B Parker; Jing-Wen Ting; Chi-Yao Chang; Steven E Ealick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

5.  Virus-encoded aminoacyl-tRNA synthetases: structural and functional characterization of mimivirus TyrRS and MetRS.

Authors:  Chantal Abergel; Joëlle Rudinger-Thirion; Richard Giegé; Jean-Michel Claverie
Journal:  J Virol       Date:  2007-09-12       Impact factor: 5.103

6.  Identification of giant Mimivirus protein functions using RNA interference.

Authors:  Haitham Sobhy; Bernard La Scola; Isabelle Pagnier; Didier Raoult; Philippe Colson
Journal:  Front Microbiol       Date:  2015-04-28       Impact factor: 5.640

Review 7.  The analysis of translation-related gene set boosts debates around origin and evolution of mimiviruses.

Authors:  Jônatas Santos Abrahão; Rodrigo Araújo; Philippe Colson; Bernard La Scola
Journal:  PLoS Genet       Date:  2017-02-16       Impact factor: 5.917

8.  Protein Sequences Recapitulate Genetic Code Evolution.

Authors:  Hervé Seligmann
Journal:  Comput Struct Biotechnol J       Date:  2018-05-30       Impact factor: 7.271

  8 in total

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