Literature DB >> 12750338

Genetic diversity and population history of golden monkeys (Rhinopithecus roxellana).

Haipeng Li1, Shi-Jie Meng, Zheng-Ming Men, Yun-Xin Fu, Ya-Ping Zhang.   

Abstract

Golden monkey (Rhinopithecus roxellana), namely the snub-nosed monkey, is a well-known endangered primate, which distributes only in the central part of mainland China. As an effort to understand the current genetic status as well as population history of this species, we collected a sample of 32 individuals from four different regions, which cover the major habitat of this species. Forty-four allozyme loci were surveyed in our study by allozyme electrophoresis, none of which was found to be polymorphic. The void of polymorphism compared with that of other nonhuman primates is surprising particularly considering that the current population size is many times larger than that of some other endangered species. Since many independent loci are surveyed in this study, the most plausible explanation for our observation is that the population has experienced a recent bottleneck. We used a coalescent approach to explore various scenarios of population bottleneck and concluded that the most recent bottleneck could have happened within the last 15,000 years. Moreover, the proposed simulation approach could be useful to researchers who need to analyze the non- or low-polymorphism data.

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Year:  2003        PMID: 12750338      PMCID: PMC1462553     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  23 in total

1.  Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA.

Authors:  S Schneider; L Excoffier
Journal:  Genetics       Date:  1999-07       Impact factor: 4.562

2.  Detecting bottlenecks and selective sweeps from DNA sequence polymorphism.

Authors:  N Galtier; F Depaulis; N H Barton
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

3.  Origins of the coalescent. 1974-1982.

Authors:  J F Kingman
Journal:  Genetics       Date:  2000-12       Impact factor: 4.562

4.  A study of interlocus allozyme heterozygosity correlations: implications for neutral theory.

Authors:  M Woodwark; D O Skibinski; R D Ward
Journal:  Heredity (Edinb)       Date:  1992-08       Impact factor: 3.821

5.  Inbreeding of bottlenecked butterfly populations. Estimation using the likelihood of changes in marker allele frequencies.

Authors:  I J Saccheri; I J Wilson; R A Nichols; M W Bruford; P M Brakefield
Journal:  Genetics       Date:  1999-03       Impact factor: 4.562

6.  Bottleneck effect on genetic variance. A theoretical investigation of the role of dominance.

Authors:  J Wang; A Caballero; P D Keightley; W G Hill
Journal:  Genetics       Date:  1998-09       Impact factor: 4.562

7.  The hitch-hiking effect of a favourable gene.

Authors:  J M Smith; J Haigh
Journal:  Genet Res       Date:  1974-02       Impact factor: 1.588

8.  A quantitative test of the neutral theory using pooled allozyme data.

Authors:  D O Skibinski; M Woodwark; R D Ward
Journal:  Genetics       Date:  1993-09       Impact factor: 4.562

9.  Sampling theory for neutral alleles in a varying environment.

Authors:  R C Griffiths; S Tavaré
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1994-06-29       Impact factor: 6.237

10.  Population bottlenecks and nonequilibrium models in population genetics. II. Number of alleles in a small population that was formed by a recent bottleneck.

Authors:  T Maruyama; P A Fuerst
Journal:  Genetics       Date:  1985-11       Impact factor: 4.562

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  8 in total

1.  Genomic analysis of snub-nosed monkeys (Rhinopithecus) identifies genes and processes related to high-altitude adaptation.

Authors:  Li Yu; Guo-Dong Wang; Jue Ruan; Yong-Bin Chen; Cui-Ping Yang; Xue Cao; Hong Wu; Yan-Hu Liu; Zheng-Lin Du; Xiao-Ping Wang; Jing Yang; Shao-Chen Cheng; Li Zhong; Lu Wang; Xuan Wang; Jing-Yang Hu; Lu Fang; Bing Bai; Kai-Le Wang; Na Yuan; Shi-Fang Wu; Bao-Guo Li; Jin-Guo Zhang; Ye-Qin Yang; Cheng-Lin Zhang; Yong-Cheng Long; Hai-Shu Li; Jing-Yuan Yang; David M Irwin; Oliver A Ryder; Ying Li; Chung-I Wu; Ya-Ping Zhang
Journal:  Nat Genet       Date:  2016-07-11       Impact factor: 38.330

2.  Tests of two methods for identifying founder effects in metapopulations reveal substantial type II error.

Authors:  R Graham Reynolds; Benjamin M Fitzpatrick
Journal:  Genetica       Date:  2013-03-17       Impact factor: 1.082

3.  Fitting background-selection predictions to levels of nucleotide variation and divergence along the human autosomes.

Authors:  Floyd A Reed; Joshua M Akey; Charles F Aquadro
Journal:  Genome Res       Date:  2005-09       Impact factor: 9.043

4.  Human influence on the population decline and loss of genetic diversity in a small and isolated population of Sichuan snub-nosed monkeys (Rhinopithecus roxellana).

Authors:  Zong Fei Chang; Mao Fang Luo; Zhi Jin Liu; Jing Yuan Yang; Zuo Fu Xiang; Ming Li; Linda Vigilant
Journal:  Genetica       Date:  2012-06-20       Impact factor: 1.082

Review 5.  Molecular evolution study in China: progress and future promise.

Authors:  Ya-ping Zhang; Song Ge
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-06-29       Impact factor: 6.237

6.  Phylogeography of Barbary macaques (Macaca sylvanus) and the origin of the Gibraltar colony.

Authors:  Lara Modolo; Walter Salzburger; Robert D Martin
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-03       Impact factor: 11.205

7.  Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA.

Authors:  Yvonne L Chan; Christian N K Anderson; Elizabeth A Hadly
Journal:  PLoS Genet       Date:  2006-04-21       Impact factor: 5.917

8.  A high-quality genome assembly for the endangered golden snub-nosed monkey (Rhinopithecus roxellana).

Authors:  Lu Wang; Jinwei Wu; Xiaomei Liu; Dandan Di; Yuhong Liang; Yifei Feng; Suyun Zhang; Baoguo Li; Xiao-Guang Qi
Journal:  Gigascience       Date:  2019-08-01       Impact factor: 6.524

  8 in total

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