Literature DB >> 27021210

Impacts of the charged residues mutation S48E/N62H on the thermostability and unfolding behavior of cold shock protein: insights from molecular dynamics simulation with Gō model.

Ji-Guo Su1, Xiao-Ming Han2, Shu-Xin Zhao2, Yan-Xue Hou2, Xing-Yuan Li2, Li-Sheng Qi3, Ji-Hua Wang4.   

Abstract

The cold shock protein from the hyperthermophile Thermotoga maritima (Tm-Csp) exhibits significantly higher thermostability than its homologue from the thermophile Bacillus caldolyticus (Bc-Csp). Experimental studies have shown that the electrostatic interactions unique to Tm-Csp are responsible for improving its thermostability. In the present work, the favorable charged residues in Tm-Csp were grafted into Bc-Csp by a double point mutation of S48E/N62H, and the impacts of the mutation on the thermostability and unfolding/folding behavior of Bc-Csp were then investigated by using a modified Gō model, in which the electrostatic interactions between charged residues were considered in the model. Our simulation results show that this Tm-Csp-like charged residue mutation can effectively improve the thermostability of Bc-Csp without changing its two-state folding mechanism. Besides that, we also studied the unfolding kinetics and unfolding/folding pathway of the wild-type Bc-Csp and its mutant. It is found that this charged residue mutation obviously enhanced the stability of the C-terminal region of Bc-Csp, which decreases the unfolding rate and changes the unfolding/folding pathway of the protein. Our studies indicate that the thermostability, unfolding kinetics and unfolding/folding pathway of Bc-Csp can be artificially changed by introducing Tm-Csp-like favorable electrostatic interactions into Bc-Csp.

Entities:  

Keywords:  Coarse-grained model; Electrostatic interactions; Folding/unfolding; Langevin dynamics simulation; Thermophilic protein

Mesh:

Substances:

Year:  2016        PMID: 27021210     DOI: 10.1007/s00894-016-2958-4

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  58 in total

1.  Thermal stability and atomic-resolution crystal structure of the Bacillus caldolyticus cold shock protein.

Authors:  U Mueller; D Perl; F X Schmid; U Heinemann
Journal:  J Mol Biol       Date:  2000-04-07       Impact factor: 5.469

2.  Electrostatic contributions to the stability of a thermophilic cold shock protein.

Authors:  Huan-Xiang Zhou; Feng Dong
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

Review 3.  Inter-residue interactions in protein folding and stability.

Authors:  M Michael Gromiha; S Selvaraj
Journal:  Prog Biophys Mol Biol       Date:  2004-10       Impact factor: 3.667

4.  Similarity and difference in the unfolding of thermophilic and mesophilic cold shock proteins studied by molecular dynamics simulations.

Authors:  Xiaoqin Huang; Huan-Xiang Zhou
Journal:  Biophys J       Date:  2006-07-14       Impact factor: 4.033

5.  Discrimination of mesophilic and thermophilic proteins using machine learning algorithms.

Authors:  M Michael Gromiha; M Xavier Suresh
Journal:  Proteins       Date:  2008-03

6.  Rational stabilization of enzymes by computational redesign of surface charge-charge interactions.

Authors:  Alexey V Gribenko; Mayank M Patel; Jiajing Liu; Scott A McCallum; Chunyu Wang; George I Makhatadze
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-05       Impact factor: 11.205

7.  Capillarity theory for the fly-casting mechanism.

Authors:  Emmanuel Trizac; Yaakov Levy; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-28       Impact factor: 11.205

8.  Role of the chain termini for the folding transition state of the cold shock protein.

Authors:  D Perl; G Holtermann; F X Schmid
Journal:  Biochemistry       Date:  2001-12-25       Impact factor: 3.162

9.  Thermodynamics of the unfolding of the cold-shock protein from Thermotoga maritima.

Authors:  D Wassenberg; C Welker; R Jaenicke
Journal:  J Mol Biol       Date:  1999-05-28       Impact factor: 5.469

10.  Universal nucleic acid-binding domain revealed by crystal structure of the B. subtilis major cold-shock protein.

Authors:  H Schindelin; M A Marahiel; U Heinemann
Journal:  Nature       Date:  1993-07-08       Impact factor: 49.962

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  2 in total

1.  Effects of pH and Salt Concentration on Stability of a Protein G Variant Using Coarse-Grained Models.

Authors:  Vinícius Martins de Oliveira; Vinícius de Godoi Contessoto; Fernando Bruno da Silva; Daniel Lucas Zago Caetano; Sidney Jurado de Carvalho; Vitor Barbanti Pereira Leite
Journal:  Biophys J       Date:  2018-01-09       Impact factor: 4.033

Review 2.  Cold-Shock Domains-Abundance, Structure, Properties, and Nucleic-Acid Binding.

Authors:  Udo Heinemann; Yvette Roske
Journal:  Cancers (Basel)       Date:  2021-01-07       Impact factor: 6.639

  2 in total

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