Literature DB >> 12660985

Chain length is the main determinant of the folding rate for proteins with three-state folding kinetics.

Oxana V Galzitskaya1, Sergiy O Garbuzynskiy, Dmitry N Ivankov, Alexei V Finkelstein.   

Abstract

We demonstrate that chain length is the main determinant of the folding rate for proteins with the three-state folding kinetics. The logarithm of their folding rate in water (k(f)) strongly anticorrelates with their chain length L (the correlation coefficient being -0.80). At the same time, the chain length has no correlation with the folding rate for two-state folding proteins (the correlation coefficient is -0.07). Another significant difference of these two groups of proteins is a strong anticorrelation between the folding rate and Baker's "relative contact order" for the two-state folders and the complete absence of such correlation for the three-state folders. Copyright 2003 Wiley-Liss, Inc.

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Year:  2003        PMID: 12660985     DOI: 10.1002/prot.10343

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  28 in total

1.  Contact order revisited: influence of protein size on the folding rate.

Authors:  Dmitry N Ivankov; Sergiy O Garbuzynskiy; Eric Alm; Kevin W Plaxco; David Baker; Alexei V Finkelstein
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

2.  Prediction of protein folding rates from the amino acid sequence-predicted secondary structure.

Authors:  Dmitry N Ivankov; Alexei V Finkelstein
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-07       Impact factor: 11.205

3.  Critical nucleation size in the folding of small apparently two-state proteins.

Authors:  Yawen Bai; Hongyi Zhou; Yaoqi Zhou
Journal:  Protein Sci       Date:  2004-04-09       Impact factor: 6.725

4.  Physical limits of cells and proteomes.

Authors:  Ken A Dill; Kingshuk Ghosh; Jeremy D Schmit
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-17       Impact factor: 11.205

5.  The N-terminal to C-terminal motif in protein folding and function.

Authors:  Mallela M G Krishna; S Walter Englander
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-18       Impact factor: 11.205

6.  Characterization of the folding landscape of monomeric lactose repressor: quantitative comparison of theory and experiment.

Authors:  Payel Das; Corey J Wilson; Giovanni Fossati; Pernilla Wittung-Stafshede; Kathleen S Matthews; Cecilia Clementi
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-03       Impact factor: 11.205

Review 7.  Protein folding thermodynamics and dynamics: where physics, chemistry, and biology meet.

Authors:  Eugene Shakhnovich
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

8.  On the role of structural class of a protein with two-state folding kinetics in determining correlations between its size, topology, and folding rate.

Authors:  Andrei Y Istomin; Donald J Jacobs; Dennis R Livesay
Journal:  Protein Sci       Date:  2007-11       Impact factor: 6.725

9.  Capillarity-like growth of protein folding nuclei.

Authors:  Xianghong Qi; John J Portman
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-04       Impact factor: 11.205

10.  Submillisecond elastic recoil reveals molecular origins of fibrin fiber mechanics.

Authors:  Nathan E Hudson; Feng Ding; Igal Bucay; E Timothy O'Brien; Oleg V Gorkun; Richard Superfine; Susan T Lord; Nikolay V Dokholyan; Michael R Falvo
Journal:  Biophys J       Date:  2013-06-18       Impact factor: 4.033

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