Literature DB >> 23790375

Submillisecond elastic recoil reveals molecular origins of fibrin fiber mechanics.

Nathan E Hudson1, Feng Ding, Igal Bucay, E Timothy O'Brien, Oleg V Gorkun, Richard Superfine, Susan T Lord, Nikolay V Dokholyan, Michael R Falvo.   

Abstract

Fibrin fibers form the structural scaffold of blood clots. Thus, their mechanical properties are of central importance to understanding hemostasis and thrombotic disease. Recent studies have revealed that fibrin fibers are elastomeric despite their high degree of molecular ordering. These results have inspired a variety of molecular models for fibrin's elasticity, ranging from reversible protein unfolding to rubber-like elasticity. An important property that has not been explored is the timescale of elastic recoil, a parameter that is critical for fibrin's mechanical function and places a temporal constraint on molecular models of fiber elasticity. Using high-frame-rate imaging and atomic force microscopy-based nanomanipulation, we measured the recoil dynamics of individual fibrin fibers and found that the recoil was orders of magnitude faster than anticipated from models involving protein refolding. We also performed steered discrete molecular-dynamics simulations to investigate the molecular origins of the observed recoil. Our results point to the unstructured αC regions of the otherwise structured fibrin molecule as being responsible for the elastic recoil of the fibers.
Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23790375      PMCID: PMC3686331          DOI: 10.1016/j.bpj.2013.04.052

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  60 in total

1.  A model of fibrin formation based on crystal structures of fibrinogen and fibrin fragments complexed with synthetic peptides.

Authors:  Z Yang; I Mochalkin; R F Doolittle
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

Review 2.  Elastic proteins: biological roles and mechanical properties.

Authors:  John Gosline; Margo Lillie; Emily Carrington; Paul Guerette; Christine Ortlepp; Ken Savage
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2002-02-28       Impact factor: 6.237

3.  Mechanism of fibrin(ogen) forced unfolding.

Authors:  Artem Zhmurov; Andre E X Brown; Rustem I Litvinov; Ruxandra I Dima; John W Weisel; Valeri Barsegov
Journal:  Structure       Date:  2011-11-09       Impact factor: 5.006

4.  Elastic properties, Young's modulus determination and structural stability of the tropocollagen molecule: a computational study by steered molecular dynamics.

Authors:  Alicia Claudia Lorenzo; Ernesto Raúl Caffarena
Journal:  J Biomech       Date:  2005-07       Impact factor: 2.712

Review 5.  A comparison of the mechanical and structural properties of fibrin fibers with other protein fibers.

Authors:  M Guthold; W Liu; E A Sparks; L M Jawerth; L Peng; M Falvo; R Superfine; R R Hantgan; S T Lord
Journal:  Cell Biochem Biophys       Date:  2007-10-02       Impact factor: 2.194

6.  Molecular basis of fibrin clot elasticity.

Authors:  Bernard B C Lim; Eric H Lee; Marcos Sotomayor; Klaus Schulten
Journal:  Structure       Date:  2008-02-21       Impact factor: 5.006

7.  N-terminal strands of filamin Ig domains act as a conformational switch under biological forces.

Authors:  Barry A Kesner; Feng Ding; Brenda R Temple; Nikolay V Dokholyan
Journal:  Proteins       Date:  2010-01

8.  The α-helix to β-sheet transition in stretched and compressed hydrated fibrin clots.

Authors:  Rustem I Litvinov; Dzhigangir A Faizullin; Yuriy F Zuev; John W Weisel
Journal:  Biophys J       Date:  2012-09-05       Impact factor: 4.033

9.  Role of intermolecular forces in defining material properties of protein nanofibrils.

Authors:  Tuomas P Knowles; Anthony W Fitzpatrick; Sarah Meehan; Helen R Mott; Michele Vendruscolo; Christopher M Dobson; Mark E Welland
Journal:  Science       Date:  2007-12-21       Impact factor: 47.728

10.  Ab initio folding of proteins with all-atom discrete molecular dynamics.

Authors:  Feng Ding; Douglas Tsao; Huifen Nie; Nikolay V Dokholyan
Journal:  Structure       Date:  2008-07       Impact factor: 5.006

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  18 in total

1.  Changes of protein stiffness during folding detect protein folding intermediates.

Authors:  Katarzyna E Małek; Robert Szoszkiewicz
Journal:  J Biol Phys       Date:  2013-08-24       Impact factor: 1.365

2.  Foam-like compression behavior of fibrin networks.

Authors:  Oleg V Kim; Xiaojun Liang; Rustem I Litvinov; John W Weisel; Mark S Alber; Prashant K Purohit
Journal:  Biomech Model Mechanobiol       Date:  2015-05-16

3.  Contribution of nascent cohesive fiber-fiber interactions to the non-linear elasticity of fibrin networks under tensile load.

Authors:  Samuel Britton; Oleg Kim; Francesco Pancaldi; Zhiliang Xu; Rustem I Litvinov; John W Weisel; Mark Alber
Journal:  Acta Biomater       Date:  2019-05-30       Impact factor: 8.947

4.  Inherent fibrin fiber tension propels mechanisms of network clearance during fibrinolysis.

Authors:  Sean J Cone; Andrew T Fuquay; Justin M Litofsky; Taylor C Dement; Christopher A Carolan; Nathan E Hudson
Journal:  Acta Biomater       Date:  2020-02-25       Impact factor: 8.947

Review 5.  Fibrinogen, red blood cells, and factor XIII in venous thrombosis.

Authors:  B L Walton; J R Byrnes; A S Wolberg
Journal:  J Thromb Haemost       Date:  2015-06       Impact factor: 5.824

Review 6.  Fibrin Formation, Structure and Properties.

Authors:  John W Weisel; Rustem I Litvinov
Journal:  Subcell Biochem       Date:  2017

Review 7.  Fibrin mechanical properties and their structural origins.

Authors:  Rustem I Litvinov; John W Weisel
Journal:  Matrix Biol       Date:  2016-08-20       Impact factor: 11.583

8.  Microscale structural changes of individual fibrin fibers during fibrinolysis.

Authors:  Spencer R Lynch; Sean M Laverty; Brittany E Bannish; Nathan E Hudson
Journal:  Acta Biomater       Date:  2022-01-07       Impact factor: 8.947

9.  Computational Biomechanical Modeling of Fibrin Networks and Platelet-Fiber Network Interactions.

Authors:  Francesco Pancaldi; Oleg V Kim; John W Weisel; Mark Alber; Zhiliang Xu
Journal:  Curr Opin Biomed Eng       Date:  2022-02-17

10.  Morphometric characterization of fibrinogen's αC regions and their role in fibrin self-assembly and molecular organization.

Authors:  Anna D Protopopova; Rustem I Litvinov; Dennis K Galanakis; Chandrasekaran Nagaswami; Nikolay A Barinov; Alexander R Mukhitov; Dmitry V Klinov; John W Weisel
Journal:  Nanoscale       Date:  2017-09-21       Impact factor: 7.790

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