Literature DB >> 12657780

A glossary of DNA structures from A to Z.

Anirban Ghosh1, Manju Bansal.   

Abstract

The right-handed double-helical Watson-Crick model for B-form DNA is the most commonly known DNA structure. In addition to this classic structure, several other forms of DNA have been observed and it is clear that the DNA molecule can assume different structures depending on the base sequence and environment. The various forms of DNA have been identified as A, B, C etc. In fact, a detailed inspection of the literature reveals that only the letters F, Q, U, V and Y are now available to describe any new DNA structure that may appear in the future. It is also apparent that it may be more relevant to talk about the A, B or C type dinucleotide steps, since several recent structures show mixtures of various different geometries and a careful analysis is essential before identifying it as a 'new structure'. This review provides a glossary of currently identified DNA structures and is quite timely as it outlines the present understanding of DNA structure exactly 50 Years after the original discovery of DNA structure by Watson and Crick.

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Year:  2003        PMID: 12657780     DOI: 10.1107/s0907444903003251

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  30 in total

1.  The transition between the B and Z conformations of DNA investigated by targeted molecular dynamics simulations with explicit solvation.

Authors:  Mika A Kastenholz; Thomas U Schwartz; Philippe H Hünenberger
Journal:  Biophys J       Date:  2006-10-15       Impact factor: 4.033

2.  The post-SCF quantum chemistry characteristics of inter- and intra-strand stacking interactions in d(CpG) and d(GpC) steps found in B-DNA, A-DNA and Z-DNA crystals.

Authors:  Piotr Cysewski
Journal:  J Mol Model       Date:  2008-11-28       Impact factor: 1.810

Review 3.  The anti-DNA antibody: origin and impact, dogmas and controversies.

Authors:  Ole P Rekvig
Journal:  Nat Rev Rheumatol       Date:  2015-06-02       Impact factor: 20.543

4.  Theory of the origin, evolution, and nature of life.

Authors:  Erik D Andrulis
Journal:  Life (Basel)       Date:  2011-12-23

5.  Structure and Biophysics for a Six Letter DNA Alphabet that Includes Imidazo[1,2-a]-1,3,5-triazine-2(8H)-4(3H)-dione (X) and 2,4-Diaminopyrimidine (K).

Authors:  Isha Singh; Myong-Jung Kim; Robert W Molt; Shuichi Hoshika; Steven A Benner; Millie M Georgiadis
Journal:  ACS Synth Biol       Date:  2017-08-15       Impact factor: 5.110

6.  Calculation of hydrodynamic properties for G-quadruplex nucleic acid structures from in silico bead models.

Authors:  Huy T Le; Robert Buscaglia; William L Dean; Jonathan B Chaires; John O Trent
Journal:  Top Curr Chem       Date:  2013

7.  Base dependent DNA-carbon nanotube interactions: activation enthalpies and assembly-disassembly control.

Authors:  Fernando Albertorio; Mary E Hughes; Jene A Golovchenko; Daniel Branton
Journal:  Nanotechnology       Date:  2009-09-02       Impact factor: 3.874

8.  Effects of Metal Ions on Conductivity and Structure of Single DNA Molecule in Different Environmental Conditions.

Authors:  Ruixin Dong; Xunling Yan; Ke Li; Ge Ban; Minghong Wang; Shouxin Cui; Bing Yang
Journal:  Nanoscale Res Lett       Date:  2010-06-04       Impact factor: 4.703

9.  New evidence on α-synuclein and Tau binding to conformation and sequence specific GC* rich DNA: Relevance to neurological disorders.

Authors:  P Vasudevaraju; Erika Guerrero; Muralidhar L Hegde; T B Collen; Gabrielle B Britton; K S Rao
Journal:  J Pharm Bioallied Sci       Date:  2012-04

10.  Small local variations in B-form DNA lead to a large variety of global geometries which can accommodate most DNA-binding protein motifs.

Authors:  Arvind Marathe; Deepti Karandur; Manju Bansal
Journal:  BMC Struct Biol       Date:  2009-04-24
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