Literature DB >> 19724110

Base dependent DNA-carbon nanotube interactions: activation enthalpies and assembly-disassembly control.

Fernando Albertorio1, Mary E Hughes, Jene A Golovchenko, Daniel Branton.   

Abstract

We quantify the base dependent interactions between single stranded DNA and single walled carbon nanotubes (SWNTs) in solution. DNA/SWNT hybrids hold the promise of applications ranging from nanoscale electronics and assembly of nanotube based materials, to drug delivery and DNA sequencing. These applications require control over the hybrid assembly and disassembly. Our analytical assay reveals the order of nucleobase binding strengths with SWNTs as G>C>A>T. Furthermore, time dependent fixed temperature experiments that probe the kinetics of the dissociation process provide values for the equilibrium constants and dissociation enthalpies that underlie the microscopic interactions. Quantifying the base dependency of hybrid stability shows how insight into the energetics of the component interactions facilitates control over hybrid assembly and disassembly.

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Year:  2009        PMID: 19724110      PMCID: PMC2739102          DOI: 10.1088/0957-4484/20/39/395101

Source DB:  PubMed          Journal:  Nanotechnology        ISSN: 0957-4484            Impact factor:   3.874


  37 in total

1.  Structure-based carbon nanotube sorting by sequence-dependent DNA assembly.

Authors:  Ming Zheng; Anand Jagota; Michael S Strano; Adelina P Santos; Paul Barone; S Grace Chou; Bruce A Diner; Mildred S Dresselhaus; Robert S McLean; G Bibiana Onoa; Georgii G Samsonidze; Ellen D Semke; Monica Usrey; Dennis J Walls
Journal:  Science       Date:  2003-11-28       Impact factor: 47.728

Review 2.  A glossary of DNA structures from A to Z.

Authors:  Anirban Ghosh; Manju Bansal
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-03-25

3.  Controlled placement of individual carbon nanotubes.

Authors:  Xue Ming Henry Huang; Robert Caldwell; Limin Huang; Seong Chan Jun; Mingyuan Huang; Matthew Y Sfeir; Stephen P O'Brien; James Hone
Journal:  Nano Lett       Date:  2005-07       Impact factor: 11.189

4.  An unexpected new optimum in the structure space of DNA solubilizing single-walled carbon nanotubes.

Authors:  Stephanie R Vogel; Manfred M Kappes; Frank Hennrich; Clemens Richert
Journal:  Chemistry       Date:  2007       Impact factor: 5.236

5.  Optical detection of DNA conformational polymorphism on single-walled carbon nanotubes.

Authors:  Daniel A Heller; Esther S Jeng; Tsun-Kwan Yeung; Brittany M Martinez; Anthonie E Moll; Joseph B Gastala; Michael S Strano
Journal:  Science       Date:  2006-01-27       Impact factor: 47.728

6.  DNA functionalization of carbon nanotubes for ultrathin atomic layer deposition of high kappa dielectrics for nanotube transistors with 60 mV/decade switching.

Authors:  Yuerui Lu; Sarunya Bangsaruntip; Xinran Wang; Li Zhang; Yoshio Nishi; Hongjie Dai
Journal:  J Am Chem Soc       Date:  2006-03-22       Impact factor: 15.419

7.  Optical absorption of DNA-carbon nanotube structures.

Authors:  Mary E Hughes; Eric Brandin; Jene A Golovchenko
Journal:  Nano Lett       Date:  2007-04-10       Impact factor: 11.189

8.  Near-infrared optical sensors based on single-walled carbon nanotubes.

Authors:  Paul W Barone; Seunghyun Baik; Daniel A Heller; Michael S Strano
Journal:  Nat Mater       Date:  2004-12-12       Impact factor: 43.841

9.  Carbon nanotubes as multifunctional biological transporters and near-infrared agents for selective cancer cell destruction.

Authors:  Nadine Wong Shi Kam; Michael O'Connell; Jeffrey A Wisdom; Hongjie Dai
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-08       Impact factor: 11.205

10.  Errors in the evaluation of Arrhenius and van't Hoff plots.

Authors:  T Keleti
Journal:  Biochem J       Date:  1983-01-01       Impact factor: 3.857

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  12 in total

1.  Offset configurations for single- and double-strand DNA inside single-walled carbon nanotubes.

Authors:  Mansoor H Alshehri; Barry J Cox; James M Hill
Journal:  Eur Biophys J       Date:  2013-11-08       Impact factor: 1.733

2.  Computational investigation of interaction of polypyrrole on the surface of single-walled carbon nanotube.

Authors:  Manoj K Shukla; Veera Boddu; Frances Hill
Journal:  J Mol Model       Date:  2014-08-17       Impact factor: 1.810

3.  DNA-nanoparticle interactions: Formation of a DNA corona and its effects on a protein corona.

Authors:  Darbi M Griffith; Dhanya T Jayaram; Diane M Spencer; David S Pisetsky; Christine K Payne
Journal:  Biointerphases       Date:  2020-10-01       Impact factor: 2.456

4.  A fundamental study of photoluminescence modulation from DNA-wrapped single-walled carbon nanotubes.

Authors:  Shusuke Oura; Masahiro Ito; Yoshikazu Homma; Kazuo Umemura
Journal:  Eur Biophys J       Date:  2017-11-20       Impact factor: 1.733

5.  On the Binding Strength Sequence for Nucleic Acid Bases and C(60) with Density Functional and Dispersion-corrected Density Functional Theories: Whether C(60) could protect nucleic acid bases from radiation-induced damage?

Authors:  Wenming Sun; Yuxiang Bu; Yixuan Wang
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2011-03-03       Impact factor: 4.126

6.  On the vibrational behavior of single- and double-walled carbon nanotubes under the physical adsorption of biomolecules in the aqueous environment: a molecular dynamics study.

Authors:  S Ajori; R Ansari; M Darvizeh
Journal:  J Mol Model       Date:  2016-02-22       Impact factor: 1.810

7.  The application of carbon nanotubes in target drug delivery systems for cancer therapies.

Authors:  Wuxu Zhang; Zhenzhong Zhang; Yingge Zhang
Journal:  Nanoscale Res Lett       Date:  2011-10-13       Impact factor: 4.703

8.  Sequence-dependent electrical response of ssDNA-decorated carbon nanotube, field-effect transistors to dopamine.

Authors:  Hari Krishna Salila Vijayalal Mohan; Jianing An; Lianxi Zheng
Journal:  Beilstein J Nanotechnol       Date:  2014-11-13       Impact factor: 3.649

Review 9.  Hybrids of Nucleic Acids and Carbon Nanotubes for Nanobiotechnology.

Authors:  Kazuo Umemura
Journal:  Nanomaterials (Basel)       Date:  2015-03-12       Impact factor: 5.076

10.  The effect of DNA-dispersed single-walled carbon nanotubes on the polymerase chain reaction.

Authors:  Ryan M Williams; Sara Nayeem; Bridget D Dolash; Letha J Sooter
Journal:  PLoS One       Date:  2014-04-04       Impact factor: 3.240

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