Literature DB >> 12655046

A metal-binding site in the catalytic subunit of anaerobic ribonucleotide reductase.

Derek T Logan1, Etienne Mulliez, Karl-Magnus Larsson, Sabrina Bodevin, Mohamed Atta, Pierre Emmanuel Garnaud, Britt-Marie Sjoberg, Marc Fontecave.   

Abstract

A Zn(Cys)(4) center has been found in the C-terminal region of the crystal structure of the anaerobic class III ribonucleotide reductase (RNR) from bacteriophage T4. The metal center is structurally related to the zinc ribbon motif and to rubredoxin and rubrerythrin. Mutant enzymes of the homologous RNR from Escherichia coli, in which the coordinating cysteines, conserved in almost all known class III RNR sequences, have been mutated into alanines, are shown to be inactive as the result of their inability to generate the catalytically essential glycyl radical. The possible roles of the metal center are discussed in relationship to the currently proposed reaction mechanism for generation of the glycyl radical in class III RNRs.

Entities:  

Mesh:

Substances:

Year:  2003        PMID: 12655046      PMCID: PMC153006          DOI: 10.1073/pnas.0736456100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  The anaerobic ribonucleotide reductase from Escherichia coli. The small protein is an activating enzyme containing a [4fe-4s](2+) center.

Authors:  J Tamarit; E Mulliez; C Meier; A Trautwein; M Fontecave
Journal:  J Biol Chem       Date:  1999-10-29       Impact factor: 5.157

2.  Alternative metal-binding sites in rubrerythrin.

Authors:  L C Sieker; M Holmes; I Le Trong; S Turley; B D Santarsiero; M Y Liu; J LeGall; R E Stenkamp
Journal:  Nat Struct Biol       Date:  1999-04

3.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

4.  Cysteines involved in radical generation and catalysis of class III anaerobic ribonucleotide reductase. A protein engineering study of bacteriophage T4 NrdD.

Authors:  J Andersson; M Westman; M Sahlin; B M Sjoberg
Journal:  J Biol Chem       Date:  2000-06-30       Impact factor: 5.157

Review 5.  Adenosylmethionine as a source of 5'-deoxyadenosyl radicals.

Authors:  M Fontecave; E Mulliez; S Ollagnier-de-Choudens
Journal:  Curr Opin Chem Biol       Date:  2001-10       Impact factor: 8.822

6.  Crystal structure of a SIR2 homolog-NAD complex.

Authors:  J Min; J Landry; R Sternglanz; R M Xu
Journal:  Cell       Date:  2001-04-20       Impact factor: 41.582

7.  Generation of the glycyl radical of the anaerobic Escherichia coli ribonucleotide reductase requires a specific activating enzyme.

Authors:  X Sun; R Eliasson; E Pontis; J Andersson; G Buist; B M Sjöberg; P Reichard
Journal:  J Biol Chem       Date:  1995-02-10       Impact factor: 5.157

8.  Analysis, by electrospray ionization mass spectrometry, of several forms of Clostridium pasteurianum rubredoxin.

Authors:  Y Petillot; E Forest; I Mathieu; J Meyer; J M Moulis
Journal:  Biochem J       Date:  1993-12-15       Impact factor: 3.857

9.  The free radical of the anaerobic ribonucleotide reductase from Escherichia coli is at glycine 681.

Authors:  X Sun; S Ollagnier; P P Schmidt; M Atta; E Mulliez; L Lepape; R Eliasson; A Gräslund; M Fontecave; P Reichard; B M Sjöberg
Journal:  J Biol Chem       Date:  1996-03-22       Impact factor: 5.157

Review 10.  Ribonucleotide reductases.

Authors:  A Jordan; P Reichard
Journal:  Annu Rev Biochem       Date:  1998       Impact factor: 23.643

View more
  14 in total

Review 1.  Biological inorganic chemistry at the beginning of the 21st century.

Authors:  Harry B Gray
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-25       Impact factor: 11.205

Review 2.  Thioredoxin and glutaredoxin-mediated redox regulation of ribonucleotide reductase.

Authors:  Rajib Sengupta; Arne Holmgren
Journal:  World J Biol Chem       Date:  2014-02-26

Review 3.  Glycyl radical activating enzymes: structure, mechanism, and substrate interactions.

Authors:  Krista A Shisler; Joan B Broderick
Journal:  Arch Biochem Biophys       Date:  2014-01-31       Impact factor: 4.013

4.  The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis.

Authors:  Wolfgang F Fricke; Henning Seedorf; Anke Henne; Markus Krüer; Heiko Liesegang; Reiner Hedderich; Gerhard Gottschalk; Rudolf K Thauer
Journal:  J Bacteriol       Date:  2006-01       Impact factor: 3.490

5.  Implications of the inability of Listeria monocytogenes EGD-e to grow anaerobically due to a deletion in the class III NrdD ribonucleotide reductase for its use as a model laboratory strain.

Authors:  Amos Ofer; Jürgen Kreft; Derek T Logan; Gerald Cohen; Ilya Borovok; Yair Aharonowitz
Journal:  J Bacteriol       Date:  2011-04-08       Impact factor: 3.490

Review 6.  Iron-sulfur protein folds, iron-sulfur chemistry, and evolution.

Authors:  Jacques Meyer
Journal:  J Biol Inorg Chem       Date:  2007-11-09       Impact factor: 3.358

7.  An Iron Reservoir to the Catalytic Metal: THE RUBREDOXIN IRON IN AN EXTRADIOL DIOXYGENASE.

Authors:  Fange Liu; Jiafeng Geng; Ryan H Gumpper; Arghya Barman; Ian Davis; Andrew Ozarowski; Donald Hamelberg; Aimin Liu
Journal:  J Biol Chem       Date:  2015-04-27       Impact factor: 5.157

8.  The Zn center of the anaerobic ribonucleotide reductase from E. coli.

Authors:  Florence Luttringer; Etienne Mulliez; Bernard Dublet; David Lemaire; Marc Fontecave
Journal:  J Biol Inorg Chem       Date:  2009-04-21       Impact factor: 3.358

9.  Biochemical and structural characterization of a novel family of cystathionine beta-synthase domain proteins fused to a Zn ribbon-like domain.

Authors:  Michael Proudfoot; Stephen A Sanders; Alex Singer; Rongguang Zhang; Greg Brown; Andrew Binkowski; Linda Xu; Jonathan A Lukin; Alexey G Murzin; Andrzej Joachimiak; Cheryl H Arrowsmith; Aled M Edwards; Alexei V Savchenko; Alexander F Yakunin
Journal:  J Mol Biol       Date:  2007-11-01       Impact factor: 5.469

10.  Ribonucleotide reductase metallocofactor: assembly, maintenance and inhibition.

Authors:  Caiguo Zhang; Guoqi Liu; Mingxia Huang
Journal:  Front Biol (Beijing)       Date:  2014-01-02
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.