Literature DB >> 12655014

Transcription of genes encoding trans-acting factors required for rRNA maturation/ribosomal subunit assembly is coordinately regulated with ribosomal protein genes and involves Rap1 in Saccharomyces cerevisiae.

Keita Miyoshi1, Chiharu Shirai, Keiko Mizuta.   

Abstract

We demonstrate that the genes encoding trans- acting factors essential for pre-rRNA processing/ribosomal subunit assembly are responsive to various kinds of stresses such as heat shock, nitrogen deprivation and a secretory defect, in coordination with ribosomal protein genes in Saccharomyces cerevisiae. The rap1-17 mutation, which produces the C-terminally truncated protein of a transcriptional factor Rap1p, affects transcriptional repression of the trans-acting factor genes due to a secretory defect as shown previously for both ribosomal protein and rRNA genes.

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Year:  2003        PMID: 12655014      PMCID: PMC152794          DOI: 10.1093/nar/gkg278

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  37 in total

1.  Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae.

Authors:  J D Hughes; P W Estep; S Tavazoie; G M Church
Journal:  J Mol Biol       Date:  2000-03-10       Impact factor: 5.469

2.  Repression of ribosome and tRNA synthesis in secretion-defective cells is signaled by a novel branch of the cell integrity pathway.

Authors:  Y Li; R D Moir; I K Sethy-Coraci; J R Warner; I M Willis
Journal:  Mol Cell Biol       Date:  2000-06       Impact factor: 4.272

Review 3.  The economics of ribosome biosynthesis in yeast.

Authors:  J R Warner
Journal:  Trends Biochem Sci       Date:  1999-11       Impact factor: 13.807

4.  Composition and functional characterization of yeast 66S ribosome assembly intermediates.

Authors:  P Harnpicharnchai; J Jakovljevic; E Horsey; T Miles; J Roman; M Rout; D Meagher; B Imai; Y Guo; C J Brame; J Shabanowitz; D F Hunt; J L Woolford
Journal:  Mol Cell       Date:  2001-09       Impact factor: 17.970

5.  Yeast Krr1p physically and functionally interacts with a novel essential Kri1p, and both proteins are required for 40S ribosome biogenesis in the nucleolus.

Authors:  T Sasaki; A Toh-E; Y Kikuchi
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

6.  RRS1, a conserved essential gene, encodes a novel regulatory protein required for ribosome biogenesis in Saccharomyces cerevisiae.

Authors:  A Tsuno; K Miyoshi; R Tsujii; T Miyakawa; K Mizuta
Journal:  Mol Cell Biol       Date:  2000-03       Impact factor: 4.272

7.  Repression of rRNA synthesis due to a secretory defect requires the C-terminal silencing domain of Rap1p in Saccharomyces cerevisiae.

Authors:  K Miyoshi; T Miyakawa; K Mizuta
Journal:  Nucleic Acids Res       Date:  2001-08-15       Impact factor: 16.971

8.  Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA.

Authors:  Y Zebarjadian; T King; M J Fournier; L Clarke; J Carbon
Journal:  Mol Cell Biol       Date:  1999-11       Impact factor: 4.272

9.  Ebp2p, yeast homologue of a human protein that interacts with Epstein-Barr virus nuclear antigen 1, is required for pre-rRNA processing and ribosomal subunit assembly.

Authors:  R Tsujii; K Miyoshi; A Tsuno; Y Matsui; A Toh-e; T Miyakawa; K Mizuta
Journal:  Genes Cells       Date:  2000-07       Impact factor: 1.891

Review 10.  Ribosome synthesis in Saccharomyces cerevisiae.

Authors:  J Venema; D Tollervey
Journal:  Annu Rev Genet       Date:  1999       Impact factor: 16.830

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  12 in total

1.  Genome-wide transcription profiling of the early phase of biofilm formation by Candida albicans.

Authors:  Luis A Murillo; George Newport; Chung-Yu Lan; Stefan Habelitz; Jan Dungan; Nina M Agabian
Journal:  Eukaryot Cell       Date:  2005-09

2.  Sphingolipid/Pkh1/2-TORC1/Sch9 Signaling Regulates Ribosome Biogenesis in Tunicamycin-Induced Stress Response in Yeast.

Authors:  Yukari Yabuki; Atsuko Ikeda; Misako Araki; Kentaro Kajiwara; Keiko Mizuta; Kouichi Funato
Journal:  Genetics       Date:  2019-03-01       Impact factor: 4.562

3.  Yeast Rrp14p is a nucleolar protein involved in both ribosome biogenesis and cell polarity.

Authors:  Hiroko Yamada; Chihiro Horigome; Takafumi Okada; Chiharu Shirai; Keiko Mizuta
Journal:  RNA       Date:  2007-09-05       Impact factor: 4.942

4.  Dynamics of the yeast transcriptome during wine fermentation reveals a novel fermentation stress response.

Authors:  Virginia D Marks; Shannan J Ho Sui; Daniel Erasmus; George K van der Merwe; Jochen Brumm; Wyeth W Wasserman; Jennifer Bryan; Hennie J J van Vuuren
Journal:  FEMS Yeast Res       Date:  2008-02       Impact factor: 2.796

5.  A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size.

Authors:  Paul Jorgensen; Ivan Rupes; Jeffrey R Sharom; Lisa Schneper; James R Broach; Mike Tyers
Journal:  Genes Dev       Date:  2004-10-01       Impact factor: 11.361

Review 6.  Feedback regulation of ribosome assembly.

Authors:  Jesús de la Cruz; Fernando Gómez-Herreros; Olga Rodríguez-Galán; Victoria Begley; María de la Cruz Muñoz-Centeno; Sebastián Chávez
Journal:  Curr Genet       Date:  2017-10-11       Impact factor: 3.886

7.  Evolutionarily conserved function of RRP36 in early cleavages of the pre-rRNA and production of the 40S ribosomal subunit.

Authors:  Marie Gérus; Chrystelle Bonnart; Michèle Caizergues-Ferrer; Yves Henry; Anthony K Henras
Journal:  Mol Cell Biol       Date:  2009-12-28       Impact factor: 4.272

8.  Hierarchical recruitment into nascent ribosomes of assembly factors required for 27SB pre-rRNA processing in Saccharomyces cerevisiae.

Authors:  Jason Talkish; Jingyu Zhang; Jelena Jakovljevic; Edward W Horsey; John L Woolford
Journal:  Nucleic Acids Res       Date:  2012-06-26       Impact factor: 16.971

9.  Genome-wide integration on transcription factors, histone acetylation and gene expression reveals genes co-regulated by histone modification patterns.

Authors:  Yayoi Natsume-Kitatani; Motoki Shiga; Hiroshi Mamitsuka
Journal:  PLoS One       Date:  2011-07-29       Impact factor: 3.240

10.  Synergistic defect in 60S ribosomal subunit assembly caused by a mutation of Rrs1p, a ribosomal protein L11-binding protein, and 3'-extension of 5S rRNA in Saccharomyces cerevisiae.

Authors:  Masanobu Nariai; Tomohisa Tanaka; Takafumi Okada; Chiharu Shirai; Chihiro Horigome; Keiko Mizuta
Journal:  Nucleic Acids Res       Date:  2005-08-12       Impact factor: 16.971

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