Literature DB >> 12634844

Erroneous incorporation of oxidized DNA precursors by Y-family DNA polymerases.

Masatomi Shimizu1, Petr Gruz, Hiroyuki Kamiya, Su-Ryang Kim, Francesca M Pisani, Chikahide Masutani, Yusuke Kanke, Hideyoshi Harashima, Fumio Hanaoka, Takehiko Nohmi.   

Abstract

Deranged oxidative metabolism is a property of many tumour cells. Oxidation of the deoxynucleotide triphosphate (dNTP) pool, as well as DNA, is a major cause of genome instability. Here, we report that two Y-family DNA polymerases of the archaeon Sulfolobus solfataricus strains P1 and P2 incorporate oxidized dNTPs into nascent DNA in an erroneous manner: the polymerases exclusively incorporate 8-OH-dGTP opposite adenine in the template, and incorporate 2-OH-dATP opposite guanine more efficiently than opposite thymine. The rate of extension of the nascent DNA chain following on from these incorporated analogues is only slightly reduced. These DNA polymerases have been shown to bypass a variety of DNA lesions. Thus, our results suggest that the Y-family DNA polymerases promote mutagenesis through the erroneous incorporation of oxidized dNTPs during DNA synthesis, in addition to facilitating translesion DNA synthesis. We also report that human DNA polymerase eta, a human Y-family DNA polymerase, incorporates the oxidized dNTPs in a similar erroneous manner.

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Year:  2003        PMID: 12634844      PMCID: PMC1315893          DOI: 10.1038/sj.embor.embor765

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  27 in total

1.  The beta clamp targets DNA polymerase IV to DNA and strongly increases its processivity.

Authors:  J Wagner; S Fujii; P Gruz; T Nohmi; R P Fuchs
Journal:  EMBO Rep       Date:  2000-12       Impact factor: 8.807

2.  The Y-family of DNA polymerases.

Authors:  H Ohmori; E C Friedberg; R P Fuchs; M F Goodman; F Hanaoka; D Hinkle; T A Kunkel; C W Lawrence; Z Livneh; T Nohmi; L Prakash; S Prakash; T Todo; G C Walker; Z Wang; R Woodgate
Journal:  Mol Cell       Date:  2001-07       Impact factor: 17.970

3.  Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication.

Authors:  H Ling; F Boudsocq; R Woodgate; W Yang
Journal:  Cell       Date:  2001-10-05       Impact factor: 41.582

4.  Crystal structure of a DinB lesion bypass DNA polymerase catalytic fragment reveals a classic polymerase catalytic domain.

Authors:  B L Zhou; J D Pata; T A Steitz
Journal:  Mol Cell       Date:  2001-08       Impact factor: 17.970

5.  Analysis of MTH1 gene function in mice with targeted mutagenesis.

Authors:  T Tsuzuki; A Egashira; S Kura
Journal:  Mutat Res       Date:  2001-06-02       Impact factor: 2.433

6.  The XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase eta.

Authors:  C Masutani; R Kusumoto; A Yamada; N Dohmae; M Yokoi; M Yuasa; M Araki; S Iwai; K Takio; F Hanaoka
Journal:  Nature       Date:  1999-06-17       Impact factor: 49.962

7.  2-Hydroxy-dATP is incorporated opposite G by Escherichia coli DNA polymerase III resulting in high mutagenicity.

Authors:  H Kamiya; H Kasai
Journal:  Nucleic Acids Res       Date:  2000-04-01       Impact factor: 16.971

8.  Mechanisms of accurate translesion synthesis by human DNA polymerase eta.

Authors:  C Masutani; R Kusumoto; S Iwai; F Hanaoka
Journal:  EMBO J       Date:  2000-06-15       Impact factor: 11.598

Review 9.  Translesion synthesis by the UmuC family of DNA polymerases.

Authors:  Z Wang
Journal:  Mutat Res       Date:  2001-07-12       Impact factor: 2.433

10.  Two DNA polymerases of Escherichia coli display distinct misinsertion specificities for 2-hydroxy-dATP during DNA synthesis.

Authors:  H Kamiya; H Maki; H Kasai
Journal:  Biochemistry       Date:  2000-08-08       Impact factor: 3.162

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  20 in total

1.  Processing of DNA lesions by archaeal DNA polymerases from Sulfolobus solfataricus.

Authors:  Petr Grúz; Masatomi Shimizu; Francesca M Pisani; Mariarita De Felice; Yusuke Kanke; Takehiko Nohmi
Journal:  Nucleic Acids Res       Date:  2003-07-15       Impact factor: 16.971

2.  Measurement of 7,8-dihydro-8-oxo-2'-deoxyguanosine metabolism in MCF-7 cells at low concentrations using accelerator mass spectrometry.

Authors:  Sang Soo Hah; Janna M Mundt; Hyung M Kim; Rhoda A Sumbad; Kenneth W Turteltaub; Paul T Henderson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-25       Impact factor: 11.205

3.  Involvement of Y-family DNA polymerases in mutagenesis caused by oxidized nucleotides in Escherichia coli.

Authors:  Masami Yamada; Tatsuo Nunoshiba; Masatomi Shimizu; Petr Gruz; Hiroyuki Kamiya; Hideyoshi Harashima; Takehiko Nohmi
Journal:  J Bacteriol       Date:  2006-07       Impact factor: 3.490

Review 4.  Ribonucleotide discrimination by translesion synthesis DNA polymerases.

Authors:  Alexandra Vaisman; Roger Woodgate
Journal:  Crit Rev Biochem Mol Biol       Date:  2018-07-04       Impact factor: 8.250

5.  Biochemical evidence of a physical interaction between Sulfolobus solfataricus B-family and Y-family DNA polymerases.

Authors:  Mariarita De Felice; Barbara Medagli; Luca Esposito; Mariarosaria De Falco; Biagio Pucci; Mosè Rossi; Petr Grùz; Takehiko Nohmi; Francesca M Pisani
Journal:  Extremophiles       Date:  2006-11-03       Impact factor: 2.395

6.  Mutagenic effects of 2-hydroxy-dATP on replication in a HeLa extract: induction of substitution and deletion mutations.

Authors:  Kazuya Satou; Hideyoshi Harashima; Hiroyuki Kamiya
Journal:  Nucleic Acids Res       Date:  2003-05-15       Impact factor: 16.971

7.  Nucleotide binding interactions modulate dNTP selectivity and facilitate 8-oxo-dGTP incorporation by DNA polymerase lambda.

Authors:  Matthew J Burak; Kip E Guja; Miguel Garcia-Diaz
Journal:  Nucleic Acids Res       Date:  2015-07-28       Impact factor: 16.971

8.  Spontaneous and photosensitization-induced mutations in primary mouse cells transitioning through senescence and immortalization.

Authors:  Andrew W Caliri; Stella Tommasi; Steven E Bates; Ahmad Besaratinia
Journal:  J Biol Chem       Date:  2020-06-02       Impact factor: 5.157

9.  Inhibition of translesion DNA polymerase by archaeal reverse gyrase.

Authors:  Anna Valenti; Giuseppe Perugino; Takehiko Nohmi; Mosè Rossi; Maria Ciaramella
Journal:  Nucleic Acids Res       Date:  2009-05-14       Impact factor: 16.971

10.  Critical amino acids in human DNA polymerases eta and kappa involved in erroneous incorporation of oxidized nucleotides.

Authors:  Atsushi Katafuchi; Akira Sassa; Naoko Niimi; Petr Grúz; Hirofumi Fujimoto; Chikahide Masutani; Fumio Hanaoka; Toshihiro Ohta; Takehiko Nohmi
Journal:  Nucleic Acids Res       Date:  2009-11-25       Impact factor: 16.971

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