Literature DB >> 15037774

Dim2p, a KH-domain protein required for small ribosomal subunit synthesis.

Emmanuel Vanrobays1, Jean-Paul Gélugne, Michèle Caizergues-Ferrer, Denis L J Lafontaine.   

Abstract

Recent proteomic analyses are revealing the dynamics of preribosome assembly. Following cleavage at processing site A(2), which generates the 20S pre-rRNA (the immediate precursor to the 18S rRNA), early RRPs (ribosomal RNA processing factors) are released in bulk from the preribosomes, and the resulting pre-40S subunits are left associated with a limited set of proteins that we refer to as the SSU RRP complex. Dim2p, a core constituent of the SSU RRP complex and conserved KH-domain containing protein, is required for pre-rRNA processing and is associated with early nucleolar and late cytoplasmic pre-rRNA species. Consistently, Dim2p shuttles between the nucle(ol)us and the cytoplasm, a trafficking that is tightly regulated by growth. The association of Dim2p with the 18S rRNA dimethyltransferase Dim1p, as well as its requirement for pre-rRNA processing at cleavage sites A(1) and A(2) and for 18S rRNA dimethylation, suggest that Dim2p may recruit Dim1p to nucleolar pre-rRNAs through its KH domain.

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Year:  2004        PMID: 15037774      PMCID: PMC1370555          DOI: 10.1261/rna.5162204

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  55 in total

1.  Degradation of ribosomal RNA precursors by the exosome.

Authors:  C Allmang; P Mitchell; E Petfalski; D Tollervey
Journal:  Nucleic Acids Res       Date:  2000-04-15       Impact factor: 16.971

Review 2.  Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions.

Authors:  Tamás Kiss
Journal:  Cell       Date:  2002-04-19       Impact factor: 41.582

3.  Yeast Krr1p physically and functionally interacts with a novel essential Kri1p, and both proteins are required for 40S ribosome biogenesis in the nucleolus.

Authors:  T Sasaki; A Toh-E; Y Kikuchi
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

4.  A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis.

Authors:  François Dragon; Jennifer E G Gallagher; Patricia A Compagnone-Post; Brianna M Mitchell; Kara A Porwancher; Karen A Wehner; Steven Wormsley; Robert E Settlage; Jeffrey Shabanowitz; Yvonne Osheim; Ann L Beyer; Donald F Hunt; Susan J Baserga
Journal:  Nature       Date:  2002-06-09       Impact factor: 49.962

Review 5.  Making ribosomes.

Authors:  Alessandro Fatica; David Tollervey
Journal:  Curr Opin Cell Biol       Date:  2002-06       Impact factor: 8.382

6.  The 18S rRNA dimethylase Dim1p is required for pre-ribosomal RNA processing in yeast.

Authors:  D Lafontaine; J Vandenhaute; D Tollervey
Journal:  Genes Dev       Date:  1995-10-15       Impact factor: 11.361

7.  KH domain: one motif, two folds.

Authors:  N V Grishin
Journal:  Nucleic Acids Res       Date:  2001-02-01       Impact factor: 16.971

8.  Nob1p, a new essential protein, associates with the 26S proteasome of growing saccharomyces cerevisiae cells.

Authors:  Y Tone; N Tanahashi; K Tanaka; M Fujimuro; H Yokosawa; A Toh-e
Journal:  Gene       Date:  2000-02-08       Impact factor: 3.688

9.  Functional analysis of six genes from chromosomes XIV and XV of Saccharomyces cerevisiae reveals YOR145c as an essential gene and YNL059c/ARP5 as a strain-dependent essential gene encoding nuclear proteins.

Authors:  S Grava; P Dumoulin; A Madania; I Tarassov; B Winsor
Journal:  Yeast       Date:  2000-08       Impact factor: 3.239

Review 10.  Ribosome synthesis in Saccharomyces cerevisiae.

Authors:  J Venema; D Tollervey
Journal:  Annu Rev Genet       Date:  1999       Impact factor: 16.830

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  27 in total

1.  PIN domain of Nob1p is required for D-site cleavage in 20S pre-rRNA.

Authors:  Alessandro Fatica; David Tollervey; Mensur Dlakić
Journal:  RNA       Date:  2004-09-23       Impact factor: 4.942

2.  The small nucle(ol)ar RNA cap trimethyltransferase is required for ribosome synthesis and intact nucleolar morphology.

Authors:  Geoffroy Colau; Marc Thiry; Vivian Leduc; Rémy Bordonné; Denis L J Lafontaine
Journal:  Mol Cell Biol       Date:  2004-09       Impact factor: 4.272

3.  Roles of Dim2 in ribosome assembly.

Authors:  Heather A Woolls; Allison C Lamanna; Katrin Karbstein
Journal:  J Biol Chem       Date:  2010-11-12       Impact factor: 5.157

4.  Ribosome assembly factors prevent premature translation initiation by 40S assembly intermediates.

Authors:  Bethany S Strunk; Cherisse R Loucks; Min Su; Harish Vashisth; Shanshan Cheng; Justin Schilling; Charles L Brooks; Katrin Karbstein; Georgios Skiniotis
Journal:  Science       Date:  2011-08-11       Impact factor: 47.728

5.  Esf2p, a U3-associated factor required for small-subunit processome assembly and compaction.

Authors:  Tran Hoang; Wen-Tao Peng; Emmanuel Vanrobays; Nevan Krogan; Shawna Hiley; Ann L Beyer; Yvonne N Osheim; Jack Greenblatt; Timothy R Hughes; Denis L J Lafontaine
Journal:  Mol Cell Biol       Date:  2005-07       Impact factor: 4.272

6.  The helicase Has1p is required for snoRNA release from pre-rRNA.

Authors:  Xue-Hai Liang; Maurille J Fournier
Journal:  Mol Cell Biol       Date:  2006-08-14       Impact factor: 4.272

7.  Crystallization and preliminary X-ray analysis of PH1566, a putative ribosomal RNA-processing factor from the hyperthermophilic archaeon Pyrococcus horikoshii OT3.

Authors:  Min Ze Jia; Jun Ohtsuka; Woo Cheol Lee; Koji Nagata; Masaru Tanokura
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-12-16

8.  TOR regulates the subcellular distribution of DIM2, a KH domain protein required for cotranscriptional ribosome assembly and pre-40S ribosome export.

Authors:  Emmanuel Vanrobays; Alexis Leplus; Yvonne N Osheim; Ann L Beyer; Ludivine Wacheul; Denis L J Lafontaine
Journal:  RNA       Date:  2008-08-28       Impact factor: 4.942

9.  A local role for the small ribosomal subunit primary binder rpS5 in final 18S rRNA processing in yeast.

Authors:  Andreas Neueder; Steffen Jakob; Gisela Pöll; Jan Linnemann; Rainer Deutzmann; Herbert Tschochner; Philipp Milkereit
Journal:  PLoS One       Date:  2010-04-19       Impact factor: 3.240

10.  Analysis of ribosome biogenesis factor-modules in yeast cells depleted from pre-ribosomes.

Authors:  Juliane Merl; Steffen Jakob; Katrin Ridinger; Thomas Hierlmeier; Rainer Deutzmann; Philipp Milkereit; Herbert Tschochner
Journal:  Nucleic Acids Res       Date:  2010-01-25       Impact factor: 16.971

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