Literature DB >> 12623012

The unfolding story of three-dimensional domain swapping.

Frederic Rousseau1, Joost W H Schymkowitz, Laura S Itzhaki.   

Abstract

Three-dimensional domain swapping is the event by which a monomer exchanges part of its structure with identical monomers to form an oligomer where each subunit has a similar structure to the monomer. The accumulating number of observations of this phenomenon in crystal structures has prompted speculation as to its biological relevance. Domain swapping was originally proposed to be a mechanism for the emergence of oligomeric proteins and as a means for functional regulation, but also to be a potentially harmful process leading to misfolding and aggregation. We highlight experimental studies carried out within the last few years that have led to a much greater understanding of the mechanism of domain swapping and of the residue- and structure-specific features that facilitate the process. We discuss the potential biological implications of domain swapping in light of these findings.

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Year:  2003        PMID: 12623012     DOI: 10.1016/s0969-2126(03)00029-7

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  78 in total

1.  Protein topology determines binding mechanism.

Authors:  Yaakov Levy; Peter G Wolynes; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-23       Impact factor: 11.205

2.  Domain swapping is a consequence of minimal frustration.

Authors:  Sichun Yang; Samuel S Cho; Yaakov Levy; Margaret S Cheung; Herbert Levine; Peter G Wolynes; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-10       Impact factor: 11.205

3.  Dynamic properties of the N-terminal swapped dimer of ribonuclease A.

Authors:  Antonello Merlino; Luigi Vitagliano; Marc Antoine Ceruso; Lelio Mazzarella
Journal:  Biophys J       Date:  2004-04       Impact factor: 4.033

4.  The impact of solubility and electrostatics on fibril formation by the H3 and H4 histones.

Authors:  Traci B Topping; Lisa M Gloss
Journal:  Protein Sci       Date:  2011-11-09       Impact factor: 6.725

Review 5.  The intertwining of structure and function: proposed helix-swapping of the SH2 domain of Grb7, a regulatory protein implicated in cancer progression and inflammation.

Authors:  Sally Pias; Tabitha A Peterson; Dennis L Johnson; Barbara A Lyons
Journal:  Crit Rev Immunol       Date:  2010       Impact factor: 2.214

Review 6.  The Landscape of Intertwined Associations in Homooligomeric Proteins.

Authors:  Shoshana J Wodak; Anatoly Malevanets; Stephen S MacKinnon
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

7.  The PTEN Tumor Suppressor Forms Homodimers in Solution.

Authors:  Frank Heinrich; Srinivas Chakravarthy; Hirsh Nanda; Antonella Papa; Pier Paolo Pandolfi; Alonzo H Ross; Rakesh K Harishchandra; Arne Gericke; Mathias Lösche
Journal:  Structure       Date:  2015-08-20       Impact factor: 5.006

Review 8.  Process of protein transport by the type III secretion system.

Authors:  Partho Ghosh
Journal:  Microbiol Mol Biol Rev       Date:  2004-12       Impact factor: 11.056

9.  Structural insights into the intertwined dimer of fyn SH2.

Authors:  Radu Huculeci; Abel Garcia-Pino; Lieven Buts; Tom Lenaerts; Nico van Nuland
Journal:  Protein Sci       Date:  2015-10-07       Impact factor: 6.725

10.  Formyl-CoA transferase encloses the CoA binding site at the interface of an interlocked dimer.

Authors:  Stefano Ricagno; Stefan Jonsson; Nigel Richards; Ylva Lindqvist
Journal:  EMBO J       Date:  2003-07-01       Impact factor: 11.598

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