Literature DB >> 26384592

Structural insights into the intertwined dimer of fyn SH2.

Radu Huculeci1,2, Abel Garcia-Pino1,2, Lieven Buts1,2, Tom Lenaerts3,4,5, Nico van Nuland1,2.   

Abstract

Src homology 2 domains are interaction modules dedicated to the recognition of phosphotyrosine sites incorporated in numerous proteins found in intracellular signaling pathways. Here we provide for the first time structural insight into the dimerization of Fyn SH2 both in solution and in crystalline conditions, providing novel crystal structures of both the dimer and peptide-bound structures of Fyn SH2. Using nuclear magnetic resonance chemical shift analysis, we show how the peptide is able to eradicate the dimerization, leading to monomeric SH2 in its bound state. Furthermore, we show that Fyn SH2's dimer form differs from other SH2 dimers reported earlier. Interestingly, the Fyn dimer can be used to construct a completed dimer model of Fyn without any steric clashes. Together these results extend our understanding of SH2 dimerization, giving structural details, on one hand, and suggesting a possible physiological relevance of such behavior, on the other hand.
© 2015 The Protein Society.

Entities:  

Keywords:  Fyn; NMR analysis; SH2; crystal structures; homodimer

Mesh:

Substances:

Year:  2015        PMID: 26384592      PMCID: PMC4815226          DOI: 10.1002/pro.2806

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  48 in total

1.  Dimer formation through domain swapping in the crystal structure of the Grb2-SH2-Ac-pYVNV complex.

Authors:  N Schiering; E Casale; P Caccia; P Giordano; C Battistini
Journal:  Biochemistry       Date:  2000-11-07       Impact factor: 3.162

Review 2.  The language of SH2 domain interactions defines phosphotyrosine-mediated signal transduction.

Authors:  Bernard A Liu; Brett W Engelmann; Piers D Nash
Journal:  FEBS Lett       Date:  2012-05-05       Impact factor: 4.124

3.  Binding of a high affinity phosphotyrosyl peptide to the Src SH2 domain: crystal structures of the complexed and peptide-free forms.

Authors:  G Waksman; S E Shoelson; N Pant; D Cowburn; J Kuriyan
Journal:  Cell       Date:  1993-03-12       Impact factor: 41.582

4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  Structure of PAK1 in an autoinhibited conformation reveals a multistage activation switch.

Authors:  M Lei; W Lu; W Meng; M C Parrini; M J Eck; B J Mayer; S C Harrison
Journal:  Cell       Date:  2000-08-04       Impact factor: 41.582

6.  1H, 13C and 15N backbone and side-chain chemical shift assignment of the Fyn SH2 domain and its complex with a phosphotyrosine peptide.

Authors:  Radu Huculeci; Lieven Buts; Tom Lenaerts; Nico A J van Nuland
Journal:  Biomol NMR Assign       Date:  2011-02-08       Impact factor: 0.746

7.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

8.  Probing the "two-pronged plug two-holed socket" model for the mechanism of binding of the Src SH2 domain to phosphotyrosyl peptides: a thermodynamic study.

Authors:  J M Bradshaw; R A Grucza; J E Ladbury; G Waksman
Journal:  Biochemistry       Date:  1998-06-23       Impact factor: 3.162

Review 9.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  3 in total

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Authors:  Peter B Chi; David A Liberles
Journal:  Protein Sci       Date:  2016-02-11       Impact factor: 6.725

2.  Engineered SH2 domains with tailored specificities and enhanced affinities for phosphoproteome analysis.

Authors:  Gianluca Veggiani; Haiming Huang; Bradley P Yates; Jiefei Tong; Tomonori Kaneko; Rakesh Joshi; Shawn S C Li; Michael F Moran; Gerald Gish; Sachdev S Sidhu
Journal:  Protein Sci       Date:  2018-12-24       Impact factor: 6.725

3.  Receptor tyrosine kinases regulate signal transduction through a liquid-liquid phase separated state.

Authors:  Chi-Chuan Lin; Kin Man Suen; Polly-Anne Jeffrey; Lukasz Wieteska; Jessica A Lidster; Peng Bao; Alistair P Curd; Amy Stainthorp; Caroline Seiler; Hans Koss; Eric Miska; Zamal Ahmed; Stephen D Evans; Carmen Molina-París; John E Ladbury
Journal:  Mol Cell       Date:  2022-02-28       Impact factor: 17.970

  3 in total

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