Literature DB >> 12839984

Formyl-CoA transferase encloses the CoA binding site at the interface of an interlocked dimer.

Stefano Ricagno1, Stefan Jonsson, Nigel Richards, Ylva Lindqvist.   

Abstract

Formyl-CoA transferase catalyses transfer of CoA from formate to oxalate in the first step of oxalate degradation by Oxalobacter formigenes, a bacterium present in the intestinal flora which is implicated in oxalate catabolism in mammals. Formyl-CoA transferase is a member of a family of CoA-transferases for which no structural information is available. We now report the three-dimensional structure of O.formigenes formyl-CoA transferase, which reveals a novel fold and a very striking assembly of the homodimer. The subunit is composed of a large and a small domain where residues from both the N- and C-termini of the subunit are part of the large domain. The linkers between the domains give the subunit a circular shape with a hole in the middle. The enzyme monomers are tightly interacting and are interlocked. This fold requires drastic rearrangement of approximately 75 residues at the C-terminus for formation of the dimer. The structure of a complex of formyl-CoA transferase with CoA is also reported and sets the scene for a mechanistic understanding of enzymes of this family of CoA-transferases.

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Year:  2003        PMID: 12839984      PMCID: PMC165657          DOI: 10.1093/emboj/cdg333

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  34 in total

1.  Crystallization and preliminary crystallographic analysis of formyl-CoA tranferase from Oxalobacter formigenes.

Authors:  Stefano Ricagno; Stefan Jonsson; Nigel Richards; Ylva Lindqvist
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-06-27

2.  Purification and characterization of oxalyl-coenzyme A decarboxylase from Oxalobacter formigenes.

Authors:  A L Baetz; M J Allison
Journal:  J Bacteriol       Date:  1989-05       Impact factor: 3.490

3.  Involvement of coenzyme A esters and two new enzymes, an enoyl-CoA hydratase and a CoA-transferase, in the hydration of crotonobetaine to L-carnitine by Escherichia coli.

Authors:  T Elssner; C Engemann; K Baumgart; H P Kleber
Journal:  Biochemistry       Date:  2001-09-18       Impact factor: 3.162

4.  DNA sequencing and expression of the formyl coenzyme A transferase gene, frc, from Oxalobacter formigenes.

Authors:  H Sidhu; S D Ogden; H Y Lung; B G Luttge; A L Baetz; A B Peck
Journal:  J Bacteriol       Date:  1997-05       Impact factor: 3.490

5.  Oxygen exchange between acetate and the catalytic glutamate residue in glutaconate CoA-transferase from Acidaminococcus fermentans. Implications for the mechanism of CoA-ester hydrolysis.

Authors:  T Selmer; W Buckel
Journal:  J Biol Chem       Date:  1999-07-23       Impact factor: 5.157

6.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

7.  Carbon assimilation by Pseudomonas oxalaticus (OX1). 6. Reactions of oxalyl-coenzyme A.

Authors:  J R QUAYLE
Journal:  Biochem J       Date:  1963-05       Impact factor: 3.857

8.  The crystal structure of succinyl-CoA synthetase from Escherichia coli at 2.5-A resolution.

Authors:  W T Wolodko; M E Fraser; M N James; W A Bridger
Journal:  J Biol Chem       Date:  1994-04-08       Impact factor: 5.157

9.  Nephrolithiasis in childhood inflammatory bowel disease.

Authors:  J H Clark; J F Fitzgerald; J M Bergstein
Journal:  J Pediatr Gastroenterol Nutr       Date:  1985-10       Impact factor: 2.839

10.  Enteric hyperoxaluria: dependence on small intestinal resection, colectomy, and steatorrhoea in chronic inflammatory bowel disease.

Authors:  E Hylander; S Jarnum; H J Jensen; M Thale
Journal:  Scand J Gastroenterol       Date:  1978       Impact factor: 2.423

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  17 in total

1.  Sampling long time scale protein motions: OSRW simulation of active site loop conformational free energies in formyl-CoA:oxalate CoA transferase.

Authors:  Sangbae Lee; Mengen Chen; Wei Yang; Nigel G J Richards
Journal:  J Am Chem Soc       Date:  2010-06-02       Impact factor: 15.419

2.  Formyl-coenzyme A (CoA):oxalate CoA-transferase from the acidophile Acetobacter aceti has a distinctive electrostatic surface and inherent acid stability.

Authors:  Elwood A Mullins; Courtney M Starks; Julie A Francois; Lee Sael; Daisuke Kihara; T Joseph Kappock
Journal:  Protein Sci       Date:  2012-03-29       Impact factor: 6.725

3.  A caffeyl-coenzyme A synthetase initiates caffeate activation prior to caffeate reduction in the acetogenic bacterium Acetobacterium woodii.

Authors:  Verena Hess; Stella Vitt; Volker Müller
Journal:  J Bacteriol       Date:  2010-12-03       Impact factor: 3.490

4.  Properties of succinyl-coenzyme A:D-citramalate coenzyme A transferase and its role in the autotrophic 3-hydroxypropionate cycle of Chloroflexus aurantiacus.

Authors:  Silke Friedmann; Birgit E Alber; Georg Fuchs
Journal:  J Bacteriol       Date:  2006-09       Impact factor: 3.490

5.  Structural basis for a bispecific NADP+ and CoA binding site in an archaeal malonyl-coenzyme A reductase.

Authors:  Ulrike Demmer; Eberhard Warkentin; Ankita Srivastava; Daniel Kockelkorn; Markus Pötter; Achim Marx; Georg Fuchs; Ulrich Ermler
Journal:  J Biol Chem       Date:  2013-01-16       Impact factor: 5.157

6.  Caffeate respiration in the acetogenic bacterium Acetobacterium woodii: a coenzyme A loop saves energy for caffeate activation.

Authors:  Verena Hess; José M González; Anutthaman Parthasarathy; Wolfgang Buckel; Volker Müller
Journal:  Appl Environ Microbiol       Date:  2013-01-11       Impact factor: 4.792

7.  Succinyl-CoA:3-sulfinopropionate CoA-transferase from Variovorax paradoxus strain TBEA6, a novel member of the class III coenzyme A (CoA)-transferase family.

Authors:  Marc Schürmann; Beatrice Hirsch; Jan Hendrik Wübbeler; Nadine Stöveken; Alexander Steinbüchel
Journal:  J Bacteriol       Date:  2013-06-14       Impact factor: 3.490

8.  Properties of succinyl-coenzyme A:L-malate coenzyme A transferase and its role in the autotrophic 3-hydroxypropionate cycle of Chloroflexus aurantiacus.

Authors:  Silke Friedmann; Astrid Steindorf; Birgit E Alber; Georg Fuchs
Journal:  J Bacteriol       Date:  2006-04       Impact factor: 3.490

9.  Meeting report of the "Symposium on kidney stones and mineral metabolism: calcium kidney stones in 2017".

Authors:  Agnieszka Pozdzik; Naim Maalouf; Emmanuel Letavernier; Isabelle Brocheriou; Jean-Jacques Body; Benjamin Vervaet; Carl Van Haute; Johanna Noels; Romy Gadisseur; Vincent Castiglione; Frédéric Cotton; Giovanni Gambaro; Michel Daudon; Khashayar Sakhaee
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10.  An ATP and oxalate generating variant tricarboxylic acid cycle counters aluminum toxicity in Pseudomonas fluorescens.

Authors:  Ranji Singh; Joseph Lemire; Ryan J Mailloux; Daniel Chénier; Robert Hamel; Vasu D Appanna
Journal:  PLoS One       Date:  2009-10-07       Impact factor: 3.240

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