Literature DB >> 21317089

Spike sorting by stochastic simulation.

Di Ge1, Eric Le Carpentier, Jérôme Idier, Dario Farina.   

Abstract

The decomposition of multiunit signals consists of the restoration of spike trains and action potentials in neural or muscular recordings. Because of the complexity of automatic decomposition, semiautomatic procedures are sometimes chosen. The main difficulty in automatic decomposition is the resolution of temporally overlapped potentials. In a previous study , we proposed a Bayesian model coupled with a maximum a posteriori (MAP) estimator for fully automatic decomposition of multiunit recordings and we showed applications to intramuscular EMG signals. In this study, we propose a more complex signal model that includes the variability in amplitude of each unit potential. Moreover, we propose the Markov Chain Monte Carlo (MCMC) simulation and a Bayesian minimum mean square error (MMSE) estimator by averaging on samples that converge in distribution to the joint posterior law. We prove the convergence property of this approach mathematically and we test the method representatively on intramuscular multiunit recordings. The results showed that its average accuracy in spike identification is greater than 90% for intramuscular signals with up to 8 concurrently active units. In addition to intramuscular signals, the method can be applied for spike sorting of other types of multiunit recordings.

Mesh:

Year:  2011        PMID: 21317089      PMCID: PMC3973566          DOI: 10.1109/TNSRE.2011.2112780

Source DB:  PubMed          Journal:  IEEE Trans Neural Syst Rehabil Eng        ISSN: 1534-4320            Impact factor:   3.802


  23 in total

1.  A model for the generation of synthetic intramuscular EMG signals to test decomposition algorithms.

Authors:  D Farina; A Crosetti; R Merletti
Journal:  IEEE Trans Biomed Eng       Date:  2001-01       Impact factor: 4.538

2.  Unsupervised spike detection and sorting with wavelets and superparamagnetic clustering.

Authors:  R Quian Quiroga; Z Nadasdy; Y Ben-Shaul
Journal:  Neural Comput       Date:  2004-08       Impact factor: 2.026

3.  Correlation-based decomposition of surface electromyograms at low contraction forces.

Authors:  A Holobar; D Zazula
Journal:  Med Biol Eng Comput       Date:  2004-07       Impact factor: 2.602

4.  Recognition of multiunit neural signals.

Authors:  A F Atiya
Journal:  IEEE Trans Biomed Eng       Date:  1992-07       Impact factor: 4.538

5.  Unsupervised Bayesian decomposition of multiunit EMG recordings using Tabu search.

Authors:  Di Ge; Eric Le Carpentier; Dario Farina
Journal:  IEEE Trans Biomed Eng       Date:  2009-05-19       Impact factor: 4.538

6.  An algorithm for sequential signal estimation and system identification for EMG signals.

Authors:  R M Studer; R J de Figueiredo; G S Moschytz
Journal:  IEEE Trans Biomed Eng       Date:  1984-03       Impact factor: 4.538

7.  High-resolution alignment of sampled waveforms.

Authors:  K C McGill; L J Dorfman
Journal:  IEEE Trans Biomed Eng       Date:  1984-06       Impact factor: 4.538

8.  Automatic decomposition of the clinical electromyogram.

Authors:  K C McGill; K L Cummins; L J Dorfman
Journal:  IEEE Trans Biomed Eng       Date:  1985-07       Impact factor: 4.538

9.  A procedure for decomposing the myoelectric signal into its constituent action potentials--Part I: Technique, theory, and implementation.

Authors:  R S LeFever; C J De Luca
Journal:  IEEE Trans Biomed Eng       Date:  1982-03       Impact factor: 4.538

10.  Automatic sorting for multi-neuronal activity recorded with tetrodes in the presence of overlapping spikes.

Authors:  Susumu Takahashi; Yuichiro Anzai; Yoshio Sakurai
Journal:  J Neurophysiol       Date:  2002-12-18       Impact factor: 2.714

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  3 in total

1.  Detection of epileptic activity in fMRI without recording the EEG.

Authors:  R Lopes; J M Lina; F Fahoum; J Gotman
Journal:  Neuroimage       Date:  2012-01-28       Impact factor: 6.556

2.  Physical principles for scalable neural recording.

Authors:  Adam H Marblestone; Bradley M Zamft; Yael G Maguire; Mikhail G Shapiro; Thaddeus R Cybulski; Joshua I Glaser; Dario Amodei; P Benjamin Stranges; Reza Kalhor; David A Dalrymple; Dongjin Seo; Elad Alon; Michel M Maharbiz; Jose M Carmena; Jan M Rabaey; Edward S Boyden; George M Church; Konrad P Kording
Journal:  Front Comput Neurosci       Date:  2013-10-21       Impact factor: 2.380

3.  A model-based spike sorting algorithm for removing correlation artifacts in multi-neuron recordings.

Authors:  Jonathan W Pillow; Jonathon Shlens; E J Chichilnisky; Eero P Simoncelli
Journal:  PLoS One       Date:  2013-05-03       Impact factor: 3.240

  3 in total

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