Literature DB >> 12604773

The pair of bacteriophytochromes from Agrobacterium tumefaciens are histidine kinases with opposing photobiological properties.

Baruch Karniol1, Richard D Vierstra.   

Abstract

Bacteriophytochrome photoreceptors (BphPs) are a family of phytochrome-like sensor kinases that help a wide variety of bacteria respond to their light environment. In Agrobacterium tumefaciens, a unique pair of BphPs with potentially opposing roles in light sensing are present. Both AtBphPs contain an N-terminal chromophore-binding domain that covalently attaches a biliverdin chromophore. Whereas AtBphP1 assumes a Pr ground state, AtBphP2 is unusual in that it assumes a Pfr ground state that is produced nonphotochemically after biliverdin binding through a transient Pr-like intermediate. Photoconversion of AtBphP2 with far-red light then generates Pr but this Pr is also unstable and rapidly reverts nonphotochemically to Pfr. AtBphP1 contains a typical two-component histidine kinase domain at its C terminus whose activity is repressed after photoconversion to Pfr. AtBphP2 also functions as a histidine kinase but instead uses a distinct two-component kinase motif that is repressed after photoconversion to Pr. We identified sequences related to this domain in numerous predicted sensing proteins in A. tumefaciens and other bacteria, indicating that AtBphP2 might represent the founding member of a family of histidine phosphorelay proteins that is widely used in environmental signaling. By using these mutually opposing BphPs, A. tumefaciens presumably has the capacity to simultaneously sense red light-rich and far-red light-rich environments through deactivation of their associated kinase cascades.

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Year:  2003        PMID: 12604773      PMCID: PMC151422          DOI: 10.1073/pnas.0437914100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

1.  Genomic analysis of the histidine kinase family in bacteria and archaea.

Authors:  Dong-Jin Kim; Steven Forst
Journal:  Microbiology (Reading)       Date:  2001-05       Impact factor: 2.777

Review 2.  The histidine protein kinase superfamily.

Authors:  T W Grebe; J B Stock
Journal:  Adv Microb Physiol       Date:  1999       Impact factor: 3.517

Review 3.  Phytochromes and light signal perception by plants--an emerging synthesis.

Authors:  H Smith
Journal:  Nature       Date:  2000-10-05       Impact factor: 49.962

4.  The genome of the natural genetic engineer Agrobacterium tumefaciens C58.

Authors:  D W Wood; J C Setubal; R Kaul; D E Monks; J P Kitajima; V K Okura; Y Zhou; L Chen; G E Wood; N F Almeida; L Woo; Y Chen; I T Paulsen; J A Eisen; P D Karp; D Bovee; P Chapman; J Clendenning; G Deatherage; W Gillet; C Grant; T Kutyavin; R Levy; M J Li; E McClelland; A Palmieri; C Raymond; G Rouse; C Saenphimmachak; Z Wu; P Romero; D Gordon; S Zhang; H Yoo; Y Tao; P Biddle; M Jung; W Krespan; M Perry; B Gordon-Kamm; L Liao; S Kim; C Hendrick; Z Y Zhao; M Dolan; F Chumley; S V Tingey; J F Tomb; M P Gordon; M V Olson; E W Nester
Journal:  Science       Date:  2001-12-14       Impact factor: 47.728

Review 5.  Phytochrome photosensory signalling networks.

Authors:  Peter H Quail
Journal:  Nat Rev Mol Cell Biol       Date:  2002-02       Impact factor: 94.444

Review 6.  Histidine kinases and response regulator proteins in two-component signaling systems.

Authors:  A H West; A M Stock
Journal:  Trends Biochem Sci       Date:  2001-06       Impact factor: 13.807

7.  Bacteriophytochrome controls photosystem synthesis in anoxygenic bacteria.

Authors:  Eric Giraud; Joël Fardoux; Nicolas Fourrier; Laure Hannibal; Bernard Genty; Pierre Bouyer; Bernard Dreyfus; André Verméglio
Journal:  Nature       Date:  2002-05-09       Impact factor: 49.962

8.  Bacteriophytochromes: phytochrome-like photoreceptors from nonphotosynthetic eubacteria.

Authors:  S J Davis; A V Vener; R D Vierstra
Journal:  Science       Date:  1999-12-24       Impact factor: 47.728

9.  Bacteriophytochromes are photochromic histidine kinases using a biliverdin chromophore.

Authors:  S H Bhoo; S J Davis; J Walker; B Karniol; R D Vierstra
Journal:  Nature       Date:  2001-12-13       Impact factor: 49.962

10.  Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58.

Authors:  B Goodner; G Hinkle; S Gattung; N Miller; M Blanchard; B Qurollo; B S Goldman; Y Cao; M Askenazi; C Halling; L Mullin; K Houmiel; J Gordon; M Vaudin; O Iartchouk; A Epp; F Liu; C Wollam; M Allinger; D Doughty; C Scott; C Lappas; B Markelz; C Flanagan; C Crowell; J Gurson; C Lomo; C Sear; G Strub; C Cielo; S Slater
Journal:  Science       Date:  2001-12-14       Impact factor: 47.728

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  61 in total

1.  The HWE histidine kinases, a new family of bacterial two-component sensor kinases with potentially diverse roles in environmental signaling.

Authors:  Baruch Karniol; Richard D Vierstra
Journal:  J Bacteriol       Date:  2004-01       Impact factor: 3.490

2.  Digging with experimental pick and computational shovel: a new addition to the histidine kinase superfamily.

Authors:  Igor B Zhulin
Journal:  J Bacteriol       Date:  2004-01       Impact factor: 3.490

3.  Bathy phytochromes in rhizobial soil bacteria.

Authors:  Gregor Rottwinkel; Inga Oberpichler; Tilman Lamparter
Journal:  J Bacteriol       Date:  2010-07-30       Impact factor: 3.490

4.  Quaternary organization of a phytochrome dimer as revealed by cryoelectron microscopy.

Authors:  Hua Li; Junrui Zhang; Richard D Vierstra; Huilin Li
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

5.  Fluorescence of phytochrome adducts with synthetic locked chromophores.

Authors:  Benjamin Zienicke; Li-Yi Chen; Htoi Khawn; Mostafa A S Hammam; Hideki Kinoshita; Johannes Reichert; Anne S Ulrich; Katsuhiko Inomata; Tilman Lamparter
Journal:  J Biol Chem       Date:  2010-11-11       Impact factor: 5.157

Review 6.  From photon to signal in phytochromes: similarities and differences between prokaryotic and plant phytochromes.

Authors:  Soshichiro Nagano
Journal:  J Plant Res       Date:  2016-01-27       Impact factor: 2.629

7.  Chromophore structure in the photocycle of the cyanobacterial phytochrome Cph1.

Authors:  Jasper J van Thor; Mukram Mackeen; Ilya Kuprov; Raymond A Dwek; Mark R Wormald
Journal:  Biophys J       Date:  2006-06-02       Impact factor: 4.033

Review 8.  Stimulus perception in bacterial signal-transducing histidine kinases.

Authors:  Thorsten Mascher; John D Helmann; Gottfried Unden
Journal:  Microbiol Mol Biol Rev       Date:  2006-12       Impact factor: 11.056

Review 9.  Phytochrome structure and signaling mechanisms.

Authors:  Nathan C Rockwell; Yi-Shin Su; J Clark Lagarias
Journal:  Annu Rev Plant Biol       Date:  2006       Impact factor: 26.379

10.  Xanthomonas campestris attenuates virulence by sensing light through a bacteriophytochrome photoreceptor.

Authors:  Hernán R Bonomi; Laila Toum; Gabriela Sycz; Rodrigo Sieira; Andrés M Toscani; Gustavo E Gudesblat; Federico C Leskow; Fernando A Goldbaum; Adrián A Vojnov; Florencia Malamud
Journal:  EMBO Rep       Date:  2016-09-12       Impact factor: 8.807

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