Literature DB >> 26818948

From photon to signal in phytochromes: similarities and differences between prokaryotic and plant phytochromes.

Soshichiro Nagano1.   

Abstract

Phytochromes represent a diverse family of red/far-red-light absorbing chromoproteins which are widespread across plants, cyanobacteria, non-photosynthetic bacteria, and more. Phytochromes play key roles in regulating physiological activities in response to light, a critical element in the acclimatization to the environment. The discovery of prokaryotic phytochromes facilitated structural studies which deepened our understanding on the general mechanisms of phytochrome action. An extrapolation of this information to plant phytochromes is justified for universally conserved functional aspects, but it is also true that there are many aspects which are unique to plant phytochromes. Here I summarize some structural studies carried out to date on both prokaryotic and plant phytochromes. I also attempt to identify aspects which are common or unique to plant and prokaryotic phytochromes. Phytochrome themselves, as well as the downstream signaling pathway in plants are more complex than in their prokaryotic counterparts. Thus many structural and functional aspects of plant phytochrome remain unresolved.

Keywords:  Photoconversion; Phytochrome; Protein structure; Signal transduction

Mesh:

Substances:

Year:  2016        PMID: 26818948     DOI: 10.1007/s10265-016-0789-0

Source DB:  PubMed          Journal:  J Plant Res        ISSN: 0918-9440            Impact factor:   2.629


  100 in total

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Authors:  Holger M Strauss; Peter Schmieder; Jon Hughes
Journal:  FEBS Lett       Date:  2005-07-18       Impact factor: 4.124

2.  Protein conformational changes of Agrobacterium phytochrome Agp1 during chromophore assembly and photoconversion.

Authors:  Steffi Noack; Norbert Michael; Ran Rosen; Tilman Lamparter
Journal:  Biochemistry       Date:  2007-03-03       Impact factor: 3.162

3.  Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion.

Authors:  Xiaojing Yang; Emina A Stojkovic; Jane Kuk; Keith Moffat
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-17       Impact factor: 11.205

Review 4.  Cyanobacteriochromes: a new superfamily of tetrapyrrole-binding photoreceptors in cyanobacteria.

Authors:  Masahiko Ikeuchi; Takami Ishizuka
Journal:  Photochem Photobiol Sci       Date:  2008-08-18       Impact factor: 3.982

5.  Characterization of two thermostable cyanobacterial phytochromes reveals global movements in the chromophore-binding domain during photoconversion.

Authors:  Andrew T Ulijasz; Gabriel Cornilescu; David von Stetten; Steve Kaminski; Maria Andrea Mroginski; Junrui Zhang; Devaki Bhaya; Peter Hildebrandt; Richard D Vierstra
Journal:  J Biol Chem       Date:  2008-05-14       Impact factor: 5.157

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Journal:  Nature       Date:  1997-04-17       Impact factor: 49.962

7.  Nuclear accumulation of the phytochrome A photoreceptor requires FHY1.

Authors:  Andreas Hiltbrunner; András Viczián; Erik Bury; Anke Tscheuschler; Stefan Kircher; Réka Tóth; Ariane Honsberger; Ferenc Nagy; Christian Fankhauser; Eberhard Schäfer
Journal:  Curr Biol       Date:  2005-12-06       Impact factor: 10.834

8.  An infrared fluorescent protein for deeper imaging.

Authors:  Jérôme Lecoq; Mark J Schnitzer
Journal:  Nat Biotechnol       Date:  2011-08-05       Impact factor: 54.908

9.  Features and development of Coot.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

10.  Signal amplification and transduction in phytochrome photosensors.

Authors:  Heikki Takala; Alexander Björling; Oskar Berntsson; Heli Lehtivuori; Stephan Niebling; Maria Hoernke; Irina Kosheleva; Robert Henning; Andreas Menzel; Janne A Ihalainen; Sebastian Westenhoff
Journal:  Nature       Date:  2014-04-30       Impact factor: 49.962

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  12 in total

1.  Diverse photoreceptors and light responses in plants.

Authors:  Sam-Geun Kong; Koji Okajima
Journal:  J Plant Res       Date:  2016-03       Impact factor: 2.629

2.  Illuminating developmental biology through photochemistry.

Authors:  Lukasz Kowalik; James K Chen
Journal:  Nat Chem Biol       Date:  2017-05-17       Impact factor: 15.040

3.  Phytochromes and Cyanobacteriochromes: Photoreceptor Molecules Incorporating a Linear Tetrapyrrole Chromophore.

Authors:  Keiji Fushimi; Rei Narikawa
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

4.  Natural diversity provides a broad spectrum of cyanobacteriochrome-based diguanylate cyclases.

Authors:  Matthew Blain-Hartung; Nathan C Rockwell; J Clark Lagarias
Journal:  Plant Physiol       Date:  2021-10-05       Impact factor: 8.005

5.  Structural photoactivation of a full-length bacterial phytochrome.

Authors:  Alexander Björling; Oskar Berntsson; Heli Lehtivuori; Heikki Takala; Ashley J Hughes; Matthijs Panman; Maria Hoernke; Stephan Niebling; Léocadie Henry; Robert Henning; Irina Kosheleva; Vladimir Chukharev; Nikolai V Tkachenko; Andreas Menzel; Gemma Newby; Dmitry Khakhulin; Michael Wulff; Janne A Ihalainen; Sebastian Westenhoff
Journal:  Sci Adv       Date:  2016-08-12       Impact factor: 14.136

Review 6.  Signal transduction in photoreceptor histidine kinases.

Authors:  Andreas Möglich
Journal:  Protein Sci       Date:  2019-08-20       Impact factor: 6.725

Review 7.  Molecular mechanisms underlying phytochrome-controlled morphogenesis in plants.

Authors:  Martina Legris; Yetkin Çaka Ince; Christian Fankhauser
Journal:  Nat Commun       Date:  2019-11-19       Impact factor: 14.919

Review 8.  Engineering Photosensory Modules of Non-Opsin-Based Optogenetic Actuators.

Authors:  Xiaocen Lu; Yi Shen; Robert E Campbell
Journal:  Int J Mol Sci       Date:  2020-09-07       Impact factor: 5.923

Review 9.  Towards the Idea of Molecular Brains.

Authors:  Youri Timsit; Sergeant-Perthuis Grégoire
Journal:  Int J Mol Sci       Date:  2021-11-01       Impact factor: 5.923

10.  Influence of the N-terminal segment and the PHY-tongue element on light-regulation in bacteriophytochromes.

Authors:  Geoffrey Gourinchas; Uršula Vide; Andreas Winkler
Journal:  J Biol Chem       Date:  2019-01-25       Impact factor: 5.157

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