Literature DB >> 16669784

Phytochrome structure and signaling mechanisms.

Nathan C Rockwell1, Yi-Shin Su, J Clark Lagarias.   

Abstract

Phytochromes are a widespread family of red/far-red responsive photoreceptors first discovered in plants, where they constitute one of the three main classes of photomorphogenesis regulators. All phytochromes utilize covalently attached bilin chromophores that enable photoconversion between red-absorbing (P(r)) and far-red-absorbing (P(fr)) forms. Phytochromes are thus photoswitchable photosensors; canonical phytochromes have a conserved N-terminal photosensory core and a C-terminal regulatory region, which typically includes a histidine-kinase-related domain. The discovery of new bacterial and cyanobacterial members of the phytochrome family within the last decade has greatly aided biochemical and structural characterization of this family, with the first crystal structure of a bacteriophytochrome photosensory core appearing in 2005. This structure and other recent biochemical studies have provided exciting new insights into the structure of phytochrome, the photoconversion process that is central to light sensing, and the mechanism of signal transfer by this important family of photoreceptors.

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Year:  2006        PMID: 16669784      PMCID: PMC2664748          DOI: 10.1146/annurev.arplant.56.032604.144208

Source DB:  PubMed          Journal:  Annu Rev Plant Biol        ISSN: 1543-5008            Impact factor:   26.379


  85 in total

1.  Defining the bilin lyase domain: lessons from the extended phytochrome superfamily.

Authors:  S H Wu; J C Lagarias
Journal:  Biochemistry       Date:  2000-11-07       Impact factor: 3.162

Review 2.  Light signal transduction in higher plants.

Authors:  Meng Chen; Joanne Chory; Christian Fankhauser
Journal:  Annu Rev Genet       Date:  2004       Impact factor: 16.830

3.  Resonance raman analysis of chromophore structure in the lumi-R photoproduct of phytochrome.

Authors:  F Andel; J C Lagarias; R A Mathies
Journal:  Biochemistry       Date:  1996-12-17       Impact factor: 3.162

4.  Resonance Raman spectra of the intermediates in phototransformation of large phytochrome: deprotonation of the chromophore in the bleached intermediate.

Authors:  Y Mizutani; S Tokutomi; T Kitagawa
Journal:  Biochemistry       Date:  1994-01-11       Impact factor: 3.162

5.  FTIR studies of phytochrome photoreactions reveal the C=O bands of the chromophore: consequences for its protonation states, conformation, and protein interaction.

Authors:  H Foerstendorf; C Benda; W Gärtner; M Storf; H Scheer; F Siebert
Journal:  Biochemistry       Date:  2001-12-11       Impact factor: 3.162

6.  Crystal structure of the tandem GAF domains from a cyanobacterial adenylyl cyclase: modes of ligand binding and dimerization.

Authors:  Sergio E Martinez; Sandra Bruder; Anita Schultz; Ning Zheng; Joachim E Schultz; Joseph A Beavo; Jürgen U Linder
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-11       Impact factor: 11.205

7.  Structural basis of a phototropin light switch.

Authors:  Shannon M Harper; Lori C Neil; Kevin H Gardner
Journal:  Science       Date:  2003-09-12       Impact factor: 47.728

8.  Photochromic biliproteins from the cyanobacterium Anabaena sp. PCC 7120: lyase activities, chromophore exchange, and photochromism in phytochrome AphA.

Authors:  Kai-Hong Zhao; Yong Ran; Mei Li; Ya-Nan Sun; Ming Zhou; Max Storf; Michaela Kupka; Stefan Böhm; Claudia Bubenzer; Hugo Scheer
Journal:  Biochemistry       Date:  2004-09-14       Impact factor: 3.162

9.  Chromophore selectivity in bacterial phytochromes: dissecting the process of chromophore attachment.

Authors:  Benjamin Quest; Wolfgang Gärtner
Journal:  Eur J Biochem       Date:  2004-03

10.  The two GAF domains in phosphodiesterase 2A have distinct roles in dimerization and in cGMP binding.

Authors:  Sergio E Martinez; Albert Y Wu; Natalie A Glavas; Xiao-Bo Tang; Stewart Turley; Wim G J Hol; Joseph A Beavo
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-23       Impact factor: 11.205

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  346 in total

Review 1.  A glimpse into the basis of vision in the kingdom Mycota.

Authors:  Alexander Idnurm; Surbhi Verma; Luis M Corrochano
Journal:  Fungal Genet Biol       Date:  2010-05-06       Impact factor: 3.495

2.  The interplay between chromophore and protein determines the extended excited state dynamics in a single-domain phytochrome.

Authors:  Chavdar Slavov; Tobias Fischer; Avishai Barnoy; Heewhan Shin; Aditya G Rao; Christian Wiebeler; Xiaoli Zeng; Yafang Sun; Qianzhao Xu; Alexander Gutt; Kai-Hong Zhao; Wolfgang Gärtner; Xiaojing Yang; Igor Schapiro; Josef Wachtveitl
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-26       Impact factor: 11.205

3.  Functional analysis of amino-terminal domains of the photoreceptor phytochrome B.

Authors:  Andrea Palágyi; Kata Terecskei; Eva Adám; Eva Kevei; Stefan Kircher; Zsuzsanna Mérai; Eberhard Schäfer; Ferenc Nagy; László Kozma-Bognár
Journal:  Plant Physiol       Date:  2010-06-07       Impact factor: 8.340

4.  Phytochrome-imposed oscillations in PIF3 protein abundance regulate hypocotyl growth under diurnal light/dark conditions in Arabidopsis.

Authors:  Judit Soy; Pablo Leivar; Nahuel González-Schain; Maria Sentandreu; Salomé Prat; Peter H Quail; Elena Monte
Journal:  Plant J       Date:  2012-06-11       Impact factor: 6.417

5.  Phytochrome regulates translation of mRNA in the cytosol.

Authors:  Inyup Paik; Seungchan Yang; Giltsu Choi
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-09       Impact factor: 11.205

6.  Functional profiling identifies genes involved in organ-specific branches of the PIF3 regulatory network in Arabidopsis.

Authors:  Maria Sentandreu; Guiomar Martín; Nahuel González-Schain; Pablo Leivar; Judit Soy; James M Tepperman; Peter H Quail; Elena Monte
Journal:  Plant Cell       Date:  2011-11-22       Impact factor: 11.277

7.  Two-component signaling elements and histidyl-aspartyl phosphorelays.

Authors:  G Eric Schaller; Joseph J Kieber; Shin-Han Shiu
Journal:  Arabidopsis Book       Date:  2008-07-14

8.  Structure-guided engineering of plant phytochrome B with altered photochemistry and light signaling.

Authors:  Junrui Zhang; Robert J Stankey; Richard D Vierstra
Journal:  Plant Physiol       Date:  2013-01-15       Impact factor: 8.340

9.  The Arabidopsis TUMOR PRONE5 gene encodes an acetylornithine aminotransferase required for arginine biosynthesis and root meristem maintenance in blue light.

Authors:  Nathalie Frémont; Michael Riefler; Andrea Stolz; Thomas Schmülling
Journal:  Plant Physiol       Date:  2013-01-15       Impact factor: 8.340

10.  Structural and biochemical characterization of the bilin lyase CpcS from Thermosynechococcus elongatus.

Authors:  Christina M Kronfel; Alexandre P Kuzin; Farhad Forouhar; Avijit Biswas; Min Su; Scott Lew; Jayaraman Seetharaman; Rong Xiao; John K Everett; Li-Chung Ma; Thomas B Acton; Gaetano T Montelione; John F Hunt; Corry E C Paul; Tierna M Dragomani; M Nazim Boutaghou; Richard B Cole; Christian Riml; Richard M Alvey; Donald A Bryant; Wendy M Schluchter
Journal:  Biochemistry       Date:  2013-11-19       Impact factor: 3.162

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