Literature DB >> 21071442

Fluorescence of phytochrome adducts with synthetic locked chromophores.

Benjamin Zienicke1, Li-Yi Chen, Htoi Khawn, Mostafa A S Hammam, Hideki Kinoshita, Johannes Reichert, Anne S Ulrich, Katsuhiko Inomata, Tilman Lamparter.   

Abstract

We performed steady state fluorescence measurements with phytochromes Agp1 and Agp2 of Agrobacterium tumefaciens and three mutants in which photoconversion is inhibited. These proteins were assembled with the natural chromophore biliverdin (BV), with phycoerythrobilin (PEB), which lacks a double bond in the ring C-D-connecting methine bridge, and with synthetic bilin derivatives in which the ring C-D-connecting methine bridge is locked. All PEB and locked chromophore adducts are photoinactive. According to fluorescence quantum yields, the adducts may be divided into four different groups: wild type BV adducts exhibiting a weak fluorescence, mutant BV adducts with about 10-fold enhanced fluorescence, adducts with locked chromophores in which the fluorescence quantum yields are around 0.02, and PEB adducts with a high quantum yield of around 0.5. Thus, the strong fluorescence of the PEB adducts is not reached by the locked chromophore adducts, although the photoconversion energy dissipation pathway is blocked. We therefore suggest that ring D of the bilin chromophore, which contributes to the extended π-electron system of the locked chromophores, provides an energy dissipation pathway that is independent on photoconversion.

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Year:  2010        PMID: 21071442      PMCID: PMC3020717          DOI: 10.1074/jbc.M110.155143

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  43 in total

1.  Phytochrome Cph1 from the cyanobacterium Synechocystis PCC6803. Purification, assembly, and quaternary structure.

Authors:  T Lamparter; B Esteban; J Hughes
Journal:  Eur J Biochem       Date:  2001-09

2.  Bacteriophytochrome controls photosystem synthesis in anoxygenic bacteria.

Authors:  Eric Giraud; Joël Fardoux; Nicolas Fourrier; Laure Hannibal; Bernard Genty; Pierre Bouyer; Bernard Dreyfus; André Verméglio
Journal:  Nature       Date:  2002-05-09       Impact factor: 49.962

Review 3.  Evolution of cyanobacterial and plant phytochromes.

Authors:  Tilman Lamparter
Journal:  FEBS Lett       Date:  2004-08-27       Impact factor: 4.124

4.  Harnessing phytochrome's glowing potential.

Authors:  Amanda J Fischer; J Clark Lagarias
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-17       Impact factor: 11.205

5.  Bathy phytochromes in rhizobial soil bacteria.

Authors:  Gregor Rottwinkel; Inga Oberpichler; Tilman Lamparter
Journal:  J Bacteriol       Date:  2010-07-30       Impact factor: 3.490

6.  The GAF domain: an evolutionary link between diverse phototransducing proteins.

Authors:  L Aravind; C P Ponting
Journal:  Trends Biochem Sci       Date:  1997-12       Impact factor: 13.807

7.  The phytofluors: a new class of fluorescent protein probes.

Authors:  J T Murphy; J C Lagarias
Journal:  Curr Biol       Date:  1997-11-01       Impact factor: 10.834

Review 8.  PAS: a multifunctional domain family comes to light.

Authors:  C P Ponting; L Aravind
Journal:  Curr Biol       Date:  1997-11-01       Impact factor: 10.834

9.  Characterization of recombinant phytochrome from the cyanobacterium Synechocystis.

Authors:  T Lamparter; F Mittmann; W Gärtner; T Börner; E Hartmann; J Hughes
Journal:  Proc Natl Acad Sci U S A       Date:  1997-10-28       Impact factor: 11.205

10.  Phytochrome control of phototropism and chlorophyll accumulation in the apical cells of protonemal filaments of wildtype and an aphototropic mutant of the moss Ceratodon purpureus.

Authors:  T Lamparter; H Esch; D Cove; E Hartmann
Journal:  Plant Cell Physiol       Date:  1997-01       Impact factor: 4.927

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  11 in total

1.  Structure-guided engineering enhances a phytochrome-based infrared fluorescent protein.

Authors:  Michele E Auldridge; Kenneth A Satyshur; David M Anstrom; Katrina T Forest
Journal:  J Biol Chem       Date:  2011-12-30       Impact factor: 5.157

2.  Unusual spectral properties of bacteriophytochrome Agp2 result from a deprotonation of the chromophore in the red-absorbing form Pr.

Authors:  Benjamin Zienicke; Isabel Molina; René Glenz; Patrick Singer; Dorothee Ehmer; Francisco Velazquez Escobar; Peter Hildebrandt; Rolf Diller; Tilman Lamparter
Journal:  J Biol Chem       Date:  2013-09-13       Impact factor: 5.157

3.  Assembly of synthetic locked phycocyanobilin derivatives with phytochrome in vitro and in vivo in Ceratodon purpureus and Arabidopsis.

Authors:  Rui Yang; Kaori Nishiyama; Ayumi Kamiya; Yutaka Ukaji; Katsuhiko Inomata; Tilman Lamparter
Journal:  Plant Cell       Date:  2012-05-11       Impact factor: 11.277

4.  Electronic transitions and heterogeneity of the bacteriophytochrome Pr absorption band: An angle balanced polarization resolved femtosecond VIS pump-IR probe study.

Authors:  Martin Linke; Yang Yang; Benjamin Zienicke; Mostafa A S Hammam; Theodore von Haimberger; Angelica Zacarias; Katsuhiko Inomata; Tilman Lamparter; Karsten Heyne
Journal:  Biophys J       Date:  2013-10-15       Impact factor: 4.033

5.  Bright blue-shifted fluorescent proteins with Cys in the GAF domain engineered from bacterial phytochromes: fluorescence mechanisms and excited-state dynamics.

Authors:  Yusaku Hontani; Daria M Shcherbakova; Mikhail Baloban; Jingyi Zhu; Vladislav V Verkhusha; John T M Kennis
Journal:  Sci Rep       Date:  2016-11-18       Impact factor: 4.379

Review 6.  Bacterial Phytochromes, Cyanobacteriochromes and Allophycocyanins as a Source of Near-Infrared Fluorescent Probes.

Authors:  Olena S Oliinyk; Konstantin G Chernov; Vladislav V Verkhusha
Journal:  Int J Mol Sci       Date:  2017-08-03       Impact factor: 5.923

7.  Ultrafast excited-state dynamics and fluorescence deactivation of near-infrared fluorescent proteins engineered from bacteriophytochromes.

Authors:  Jingyi Zhu; Daria M Shcherbakova; Yusaku Hontani; Vladislav V Verkhusha; John T M Kennis
Journal:  Sci Rep       Date:  2015-08-06       Impact factor: 4.379

8.  Far-red light photoactivatable near-infrared fluorescent proteins engineered from a bacterial phytochrome.

Authors:  Kiryl D Piatkevich; Fedor V Subach; Vladislav V Verkhusha
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

9.  Removal of Chromophore-Proximal Polar Atoms Decreases Water Content and Increases Fluorescence in a Near Infrared Phytofluor.

Authors:  Heli Lehtivuori; Shyamosree Bhattacharya; Nicolaas M Angenent-Mari; Kenneth A Satyshur; Katrina T Forest
Journal:  Front Mol Biosci       Date:  2015-11-25

10.  Fast Photochemistry of Prototypical Phytochromes-A Species vs. Subunit Specific Comparison.

Authors:  Janne A Ihalainen; Heikki Takala; Heli Lehtivuori
Journal:  Front Mol Biosci       Date:  2015-12-23
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