Literature DB >> 12600943

SWI/SNF-dependent chromatin remodeling of RNR3 requires TAF(II)s and the general transcription machinery.

Vishva Mitra Sharma1, Bing Li, Joseph C Reese.   

Abstract

Gene expression requires the recruitment of chromatin remodeling activities and general transcription factors (GTFs) to promoters. Whereas the role of activators in recruiting chromatin remodeling activities has been clearly demonstrated, the contributions of the transcription machinery have not been firmly established. Here we demonstrate that the remodeling of the RNR3 promoter requires a number of GTFs, mediator and RNA polymerase II. We also show that remodeling is dependent upon the SWI/SNF complex, and that TFIID and RNA polymerase II are required for its recruitment to the promoter. In contrast, Gcn5p-dependent histone acetylation occurs independently of TFIID and RNA polymerase II function, and we provide evidence that acetylation increases the extent of nucleosome remodeling, but is not required for SWI/SNF recruitment. Thus, the general transcription machinery can contribute to nucleosome remodeling by mediating the association of SWI/SNF with promoters, thereby revealing a novel pathway for the recruitment of chromatin remodeling activities.

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Year:  2003        PMID: 12600943      PMCID: PMC195993          DOI: 10.1101/gad.1039503

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  78 in total

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Authors:  R G Roeder
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1998

2.  Recruitment of the SWI/SNF chromatin remodeling complex by transcriptional activators.

Authors:  N Yudkovsky; C Logie; S Hahn; C L Peterson
Journal:  Genes Dev       Date:  1999-09-15       Impact factor: 11.361

3.  Enhancement of TBP binding by activators and general transcription factors.

Authors:  X Y Li; A Virbasius; X Zhu; M R Green
Journal:  Nature       Date:  1999-06-10       Impact factor: 49.962

4.  Mapping DNA interaction sites of chromosomal proteins using immunoprecipitation and polymerase chain reaction.

Authors:  A Hecht; M Grunstein
Journal:  Methods Enzymol       Date:  1999       Impact factor: 1.600

5.  Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme.

Authors:  L Kuras; K Struhl
Journal:  Nature       Date:  1999-06-10       Impact factor: 49.962

6.  GAGA factor and the TFIID complex collaborate in generating an open chromatin structure at the Drosophila melanogaster hsp26 promoter.

Authors:  Boris A Leibovitch; Quinn Lu; Lawrence R Benjamin; Yingyun Liu; David S Gilmour; Sarah C R Elgin
Journal:  Mol Cell Biol       Date:  2002-09       Impact factor: 4.272

7.  TFIID and human mediator coactivator complexes assemble cooperatively on promoter DNA.

Authors:  Kristina M Johnson; Jin Wang; Andrea Smallwood; Charina Arayata; Michael Carey
Journal:  Genes Dev       Date:  2002-07-15       Impact factor: 11.361

8.  Modifying gene expression programs by altering core promoter chromatin architecture.

Authors:  Stavros Lomvardas; Dimitris Thanos
Journal:  Cell       Date:  2002-07-26       Impact factor: 41.582

9.  The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4.

Authors:  E Larschan; F Winston
Journal:  Genes Dev       Date:  2001-08-01       Impact factor: 11.361

10.  Hog1 kinase converts the Sko1-Cyc8-Tup1 repressor complex into an activator that recruits SAGA and SWI/SNF in response to osmotic stress.

Authors:  Markus Proft; Kevin Struhl
Journal:  Mol Cell       Date:  2002-06       Impact factor: 17.970

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  52 in total

1.  Genome Wide Analysis of WD40 Proteins in Saccharomyces cerevisiae and Their Orthologs in Candida albicans.

Authors:  Buddhi Prakash Jain
Journal:  Protein J       Date:  2019-02       Impact factor: 2.371

2.  Roles of SWI/SNF and HATs throughout the dynamic transcription of a yeast glucose-repressible gene.

Authors:  Fuqiang Geng; Brehon C Laurent
Journal:  EMBO J       Date:  2003-12-18       Impact factor: 11.598

3.  Targeting of Swi/Snf to the yeast GAL1 UAS G requires the Mediator, TAF IIs, and RNA polymerase II.

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Journal:  EMBO J       Date:  2004-09-23       Impact factor: 11.598

4.  Distinct role of Mediator tail module in regulation of SAGA-dependent, TATA-containing genes in yeast.

Authors:  Suraiya A Ansari; Mythily Ganapathi; Joris J Benschop; Frank C P Holstege; Joseph T Wade; Randall H Morse
Journal:  EMBO J       Date:  2011-10-04       Impact factor: 11.598

Review 5.  Inducible gene expression: diverse regulatory mechanisms.

Authors:  Vikki M Weake; Jerry L Workman
Journal:  Nat Rev Genet       Date:  2010-04-27       Impact factor: 53.242

6.  Distinct roles for the RSC and Swi/Snf ATP-dependent chromatin remodelers in DNA double-strand break repair.

Authors:  Bob Chai; Jian Huang; Bradley R Cairns; Brehon C Laurent
Journal:  Genes Dev       Date:  2005-07-15       Impact factor: 11.361

7.  Activation of Saccharomyces cerevisiae HIS3 results in Gcn4p-dependent, SWI/SNF-dependent mobilization of nucleosomes over the entire gene.

Authors:  Yeonjung Kim; Neil McLaughlin; Kim Lindstrom; Toshio Tsukiyama; David J Clark
Journal:  Mol Cell Biol       Date:  2006-09-18       Impact factor: 4.272

8.  Simultaneous recruitment of coactivators by Gcn4p stimulates multiple steps of transcription in vivo.

Authors:  Chhabi K Govind; Sungpil Yoon; Hongfang Qiu; Sudha Govind; Alan G Hinnebusch
Journal:  Mol Cell Biol       Date:  2005-07       Impact factor: 4.272

9.  Identification of transcription complexes that contain the double bromodomain protein Brd2 and chromatin remodeling machines.

Authors:  Gerald V Denis; Mark E McComb; Douglas V Faller; Anupama Sinha; Paul B Romesser; Catherine E Costello
Journal:  J Proteome Res       Date:  2006-03       Impact factor: 4.466

10.  Molecular genetic analysis of the yeast repressor Rfx1/Crt1 reveals a novel two-step regulatory mechanism.

Authors:  Zhengjian Zhang; Joseph C Reese
Journal:  Mol Cell Biol       Date:  2005-09       Impact factor: 4.272

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