Literature DB >> 12595565

RNA sequences that work as transcriptional activating regions.

Shamol Saha1, Aseem Z Ansari, Kevin A Jarrell, Mark Ptashne, Kevin A Jarell.   

Abstract

We describe a set of RNA molecules that work as transcriptional activators when tethered to DNA. These RNA activating regions were found amongst a randomized set of molecules bearing variants of a 10 nt loop attached to an RNA stem. The various RNA activating regions all bear an identical five- residue sequence with an interspersed sixth residue. The result shows that although all natural activating regions characterized thus far are peptidic, this function can be served by other kinds of moieties as well.

Mesh:

Substances:

Year:  2003        PMID: 12595565      PMCID: PMC149820          DOI: 10.1093/nar/gkg227

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  33 in total

1.  Targeting, disruption, replacement, and allele rescue: integrative DNA transformation in yeast.

Authors:  R Rothstein
Journal:  Methods Enzymol       Date:  1991       Impact factor: 1.600

Review 2.  Specific interaction between RNA phage coat proteins and RNA.

Authors:  G W Witherell; J M Gott; O C Uhlenbeck
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1991

3.  Critical structural elements of the VP16 transcriptional activation domain.

Authors:  W D Cress; S J Triezenberg
Journal:  Science       Date:  1991-01-04       Impact factor: 47.728

4.  Deletion analysis of GAL4 defines two transcriptional activating segments.

Authors:  J Ma; M Ptashne
Journal:  Cell       Date:  1987-03-13       Impact factor: 41.582

5.  Transcription in yeast activated by a putative amphipathic alpha helix linked to a DNA binding unit.

Authors:  E Giniger; M Ptashne
Journal:  Nature       Date:  1987 Dec 17-23       Impact factor: 49.962

6.  GAL4 activates gene expression in mammalian cells.

Authors:  H Kakidani; M Ptashne
Journal:  Cell       Date:  1988-01-29       Impact factor: 41.582

7.  A new class of yeast transcriptional activators.

Authors:  J Ma; M Ptashne
Journal:  Cell       Date:  1987-10-09       Impact factor: 41.582

8.  GAL11P: a yeast mutation that potentiates the effect of weak GAL4-derived activators.

Authors:  H J Himmelfarb; J Pearlberg; D H Last; M Ptashne
Journal:  Cell       Date:  1990-12-21       Impact factor: 41.582

9.  Anti-(U1) small nuclear RNA antibodies in anti-small nuclear ribonucleoprotein sera from patients with connective tissue diseases.

Authors:  W J van Venrooij; R Hoet; J Castrop; B Hageman; I W Mattaj; L B van de Putte
Journal:  J Clin Invest       Date:  1990-12       Impact factor: 14.808

10.  Yeast activators stimulate plant gene expression.

Authors:  J Ma; E Przibilla; J Hu; L Bogorad; M Ptashne
Journal:  Nature       Date:  1988-08-18       Impact factor: 49.962

View more
  11 in total

1.  Tracking, tuning, and terminating microbial physiology using synthetic riboregulators.

Authors:  Jarred M Callura; Daniel J Dwyer; Farren J Isaacs; Charles R Cantor; James J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-16       Impact factor: 11.205

2.  A yeast RNA-hybrid system for the detection of RNA-RNA interactions in vivo.

Authors:  Nicolas Piganeau; Ursula E Schauer; Renée Schroeder
Journal:  RNA       Date:  2005-11-21       Impact factor: 4.942

3.  Versatile RNA-sensing transcriptional regulators for engineering genetic networks.

Authors:  Julius B Lucks; Lei Qi; Vivek K Mutalik; Denise Wang; Adam P Arkin
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-09       Impact factor: 11.205

4.  A three-hybrid screen identifies mRNAs controlled by a regulatory protein.

Authors:  Daniel Seay; Brad Hook; Katie Evans; Marvin Wickens
Journal:  RNA       Date:  2006-06-29       Impact factor: 4.942

5.  Roles for miRNA-378/378* in adipocyte gene expression and lipogenesis.

Authors:  Isabelle Gerin; Guido T Bommer; Colin S McCoin; Kyle M Sousa; Venkatesh Krishnan; Ormond A MacDougald
Journal:  Am J Physiol Endocrinol Metab       Date:  2010-05-18       Impact factor: 4.310

Review 6.  Controlling gene networks and cell fate with precision-targeted DNA-binding proteins and small-molecule-based genome readers.

Authors:  Asuka Eguchi; Garrett O Lee; Fang Wan; Graham S Erwin; Aseem Z Ansari
Journal:  Biochem J       Date:  2014-09-15       Impact factor: 3.857

Review 7.  Small-molecule regulators that mimic transcription factors.

Authors:  José A Rodríguez-Martínez; Kimberly J Peterson-Kaufman; Aseem Z Ansari
Journal:  Biochim Biophys Acta       Date:  2010-09-06

Review 8.  Riboactivators: transcription activation by noncoding RNA.

Authors:  Aseem Z Ansari
Journal:  Crit Rev Biochem Mol Biol       Date:  2009 Jan-Feb       Impact factor: 8.250

Review 9.  Reprogramming cell fate with artificial transcription factors.

Authors:  Evan A Heiderscheit; Asuka Eguchi; Mackenzie C Spurgat; Aseem Z Ansari
Journal:  FEBS Lett       Date:  2018-02-11       Impact factor: 4.124

10.  An RNA-based transcription activator derived from an inhibitory aptamer.

Authors:  Shengchun Wang; Jason R E Shepard; Hua Shi
Journal:  Nucleic Acids Res       Date:  2010-01-12       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.