Literature DB >> 29389011

Reprogramming cell fate with artificial transcription factors.

Evan A Heiderscheit1,2, Asuka Eguchi1,2, Mackenzie C Spurgat1,2, Aseem Z Ansari1,2.   

Abstract

Transcription factors (TFs) reprogram cell states by exerting control over gene regulatory networks and the epigenetic landscape of a cell. Artificial transcription factors (ATFs) are designer regulatory proteins comprised of modular units that can be customized to overcome challenges faced by natural TFs in establishing and maintaining desired cell states. Decades of research on DNA-binding proteins and synthetic molecules has provided a molecular toolkit for ATF design and the construction of genome-scale libraries of ATFs capable of phenotypic manipulation and reprogramming of cell states. Here, we compare the unique strengths and limitations of different ATF platforms, highlight the advantages of cooperative assembly, and present the potential of ATF libraries in revealing gene regulatory networks that govern cell fate choices.
© 2018 Federation of European Biochemical Societies.

Entities:  

Keywords:  artificial transcription factor; cell fate; reprogramming

Mesh:

Substances:

Year:  2018        PMID: 29389011      PMCID: PMC5869137          DOI: 10.1002/1873-3468.12993

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  124 in total

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Journal:  Mol Cell Biol       Date:  2006-01       Impact factor: 4.272

2.  Phenotypic alteration and target gene identification using combinatorial libraries of zinc finger proteins in prokaryotic cells.

Authors:  Kyung-Soon Park; Young-Soon Jang; Horim Lee; Jin-Soo Kim
Journal:  J Bacteriol       Date:  2005-08       Impact factor: 3.490

3.  Mapping polyamide-DNA interactions in human cells reveals a new design strategy for effective targeting of genomic sites.

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Review 4.  Engineering human cells and tissues through pluripotent stem cells.

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Journal:  Curr Opin Biotechnol       Date:  2016-04-12       Impact factor: 9.740

5.  Expression of therapeutic proteins after delivery of chemically modified mRNA in mice.

Authors:  Michael S D Kormann; Günther Hasenpusch; Manish K Aneja; Gabriela Nica; Andreas W Flemmer; Susanne Herber-Jonat; Marceline Huppmann; Lauren E Mays; Marta Illenyi; Andrea Schams; Matthias Griese; Iris Bittmann; Rupert Handgretinger; Dominik Hartl; Joseph Rosenecker; Carsten Rudolph
Journal:  Nat Biotechnol       Date:  2011-01-09       Impact factor: 54.908

6.  Modulation of drug resistance by artificial transcription factors.

Authors:  Pilar Blancafort; Mario P Tschan; Sharon Bergquist; Daniel Guthy; Arndt Brachat; Dennis A Sheeter; Bruce E Torbett; Dirk Erdmann; Carlos F Barbas
Journal:  Mol Cancer Ther       Date:  2008-03-04       Impact factor: 6.261

7.  The developmental potential of iPSCs is greatly influenced by reprogramming factor selection.

Authors:  Yosef Buganim; Styliani Markoulaki; Niek van Wietmarschen; Heather Hoke; Tao Wu; Kibibi Ganz; Batool Akhtar-Zaidi; Yupeng He; Brian J Abraham; David Porubsky; Elisabeth Kulenkampff; Dina A Faddah; Linyu Shi; Qing Gao; Sovan Sarkar; Malkiel Cohen; Johanna Goldmann; Joseph R Nery; Matthew D Schultz; Joseph R Ecker; Andrew Xiao; Richard A Young; Peter M Lansdorp; Rudolf Jaenisch
Journal:  Cell Stem Cell       Date:  2014-09-04       Impact factor: 24.633

8.  Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts.

Authors:  Masato Nakagawa; Michiyo Koyanagi; Koji Tanabe; Kazutoshi Takahashi; Tomoko Ichisaka; Takashi Aoi; Keisuke Okita; Yuji Mochiduki; Nanako Takizawa; Shinya Yamanaka
Journal:  Nat Biotechnol       Date:  2007-11-30       Impact factor: 54.908

9.  Induction of stable drug resistance in human breast cancer cells using a combinatorial zinc finger transcription factor library.

Authors:  Jeongeun Lee; Andrew S Hirsh; Ben S Wittner; Morgan L Maeder; Rajasekhar Singavarapu; Magdalena Lang; Sailajah Janarthanan; Ultan McDermott; Vijay Yajnik; Sridhar Ramaswamy; J Keith Joung; Dennis C Sgroi
Journal:  PLoS One       Date:  2011-07-19       Impact factor: 3.240

10.  Small-molecule-driven hepatocyte differentiation of human pluripotent stem cells.

Authors:  Richard Siller; Sebastian Greenhough; Elena Naumovska; Gareth J Sullivan
Journal:  Stem Cell Reports       Date:  2015-04-30       Impact factor: 7.765

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  3 in total

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Authors:  Anna M Chiarella; Dongbo Lu; Nathaniel A Hathaway
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2.  Single position substitution of hairpin pyrrole-imidazole polyamides imparts distinct DNA-binding profiles across the human genome.

Authors:  Paul B Finn; Devesh Bhimsaria; Asfa Ali; Asuka Eguchi; Aseem Z Ansari; Peter B Dervan
Journal:  PLoS One       Date:  2020-12-22       Impact factor: 3.240

Review 3.  Induced Pluripotency: A Powerful Tool for In Vitro Modeling.

Authors:  Romana Zahumenska; Vladimir Nosal; Marek Smolar; Terezia Okajcekova; Henrieta Skovierova; Jan Strnadel; Erika Halasova
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