Literature DB >> 19280431

Riboactivators: transcription activation by noncoding RNA.

Aseem Z Ansari1.   

Abstract

The paradigm of gene regulation was forever changed by the discovery that short RNA duplexes could directly regulate gene expression. Most regulatory roles attributed to noncoding RNA were often repressive. Recent observations are beginning to reveal that duplex RNA molecules can stimulate gene transcription. These RNA activators employ a wide array of mechanisms to up-regulate transcription of target genes, including functioning as DNA-tethered activation domains, as coactivators and modulators of general transcriptional machinery, and as regulators of other noncoding transcripts. The discoveries over the past few years defy "Moore's law" in the breath-taking rapidity with which new roles for noncoding RNA in gene expression are being revealed. As gene regulatory networks are reconstructed to accommodate the influence of noncoding RNAs, their importance in maintenance of cellular health will become increasingly apparent. In fact, a new generation of therapeutic agents will focus on modulating the function of noncoding RNA.

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Year:  2009        PMID: 19280431      PMCID: PMC2749515          DOI: 10.1080/10409230902734044

Source DB:  PubMed          Journal:  Crit Rev Biochem Mol Biol        ISSN: 1040-9238            Impact factor:   8.250


  101 in total

Review 1.  Regulatory diversity among metazoan co-activator complexes.

Authors:  Dylan J Taatjes; Michael T Marr; Robert Tjian
Journal:  Nat Rev Mol Cell Biol       Date:  2004-05       Impact factor: 94.444

2.  The SINE-encoded mouse B2 RNA represses mRNA transcription in response to heat shock.

Authors:  Tiffany A Allen; Sandra Von Kaenel; James A Goodrich; Jennifer F Kugel
Journal:  Nat Struct Mol Biol       Date:  2004-08-08       Impact factor: 15.369

Review 3.  Mechanisms of gene silencing by double-stranded RNA.

Authors:  Gunter Meister; Thomas Tuschl
Journal:  Nature       Date:  2004-09-16       Impact factor: 49.962

Review 4.  Unlocking the potential of the human genome with RNA interference.

Authors:  Gregory J Hannon; John J Rossi
Journal:  Nature       Date:  2004-09-16       Impact factor: 49.962

5.  A small modulatory dsRNA specifies the fate of adult neural stem cells.

Authors:  Tomoko Kuwabara; Jenny Hsieh; Kinichi Nakashima; Kazunari Taira; Fred H Gage
Journal:  Cell       Date:  2004-03-19       Impact factor: 41.582

6.  Gene regulation for higher cells: a theory.

Authors:  R J Britten; E H Davidson
Journal:  Science       Date:  1969-07-25       Impact factor: 47.728

7.  Engineering a ligand-dependent RNA transcriptional activator.

Authors:  Allen R Buskirk; Angela Landrigan; David R Liu
Journal:  Chem Biol       Date:  2004-08

8.  Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene.

Authors:  Joseph A Martens; Lisa Laprade; Fred Winston
Journal:  Nature       Date:  2004-06-03       Impact factor: 49.962

Review 9.  Directed evolution of nucleic acid enzymes.

Authors:  Gerald F Joyce
Journal:  Annu Rev Biochem       Date:  2004       Impact factor: 23.643

10.  B2 RNA binds directly to RNA polymerase II to repress transcript synthesis.

Authors:  Celso A Espinoza; Tiffany A Allen; Aaron R Hieb; Jennifer F Kugel; James A Goodrich
Journal:  Nat Struct Mol Biol       Date:  2004-08-08       Impact factor: 15.369

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  5 in total

1.  Regulation of the apolipoprotein gene cluster by a long noncoding RNA.

Authors:  Paul Halley; Beena M Kadakkuzha; Mohammad Ali Faghihi; Marco Magistri; Zane Zeier; Olga Khorkova; Carlos Coito; Jane Hsiao; Matthew Lawrence; Claes Wahlestedt
Journal:  Cell Rep       Date:  2014-01-02       Impact factor: 9.423

2.  A coarse-grained model for assisting the investigation of structure and dynamics of large nucleic acids by ion mobility spectrometry-mass spectrometry.

Authors:  S Vangaveti; R J D'Esposito; J L Lippens; D Fabris; S V Ranganathan
Journal:  Phys Chem Chem Phys       Date:  2017-06-14       Impact factor: 3.676

3.  Analysis of antisense expression by whole genome tiling microarrays and siRNAs suggests mis-annotation of Arabidopsis orphan protein-coding genes.

Authors:  Casey R Richardson; Qing-Jun Luo; Viktoria Gontcharova; Ying-Wen Jiang; Manoj Samanta; Eunseog Youn; Christopher D Rock
Journal:  PLoS One       Date:  2010-05-26       Impact factor: 3.240

Review 4.  Regulation of eukaryotic gene expression by the untranslated gene regions and other non-coding elements.

Authors:  Lucy W Barrett; Sue Fletcher; Steve D Wilton
Journal:  Cell Mol Life Sci       Date:  2012-04-27       Impact factor: 9.261

5.  Trans-Reactivation: A New Epigenetic Phenomenon Underlying Transcriptional Reactivation of Silenced Genes.

Authors:  Maria Cristina Onorati; Walter Arancio; Vincenzo Cavalieri; Antonia M R Ingrassia; Giulio Pavesi; Davide F V Corona
Journal:  PLoS Genet       Date:  2015-08-20       Impact factor: 5.917

  5 in total

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