Literature DB >> 12588998

Cascade of distinct histone modifications during collagenase gene activation.

Joost H A Martens1, Matty Verlaan, Eric Kalkhoven, Alt Zantema.   

Abstract

Gene activation in eukaryotes requires chromatin remodeling, in part via histone modifications. To study the events at the promoter of a mitogen-inducible gene, we examined the induction of expression of the collagenase gene. It has been established that the collagenase gene can be activated by c-Jun and c-Fos and that the transcriptional coactivator p300 is involved in the activation. As expected, we found histone acetyltransferase activity at the collagenase promoter during activation. Interestingly, we also found histone methyltransferase and kinase activity. Strikingly, the first modification observed is methylation of histone H3 lysine 4, which correlates with the binding of the SET9 methyltransferase and the assembly of a complex consisting of c-Jun, c-Fos, TATA binding protein, and RNA polymerase II. The assembly of the preinitiation complex also shows an ordered binding of the acetyltransferase p300, the RSK2 kinase, and the SWI/SNF component Brg-1. Our results suggest that collagenase gene activation involves a dynamic recruitment of different factors and that in addition to acetylation, histone H3 lysine 4 di- and trimethylation and histone H3 serine 10 phosphorylation are important steps in the activation of this gene.

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Year:  2003        PMID: 12588998      PMCID: PMC151710          DOI: 10.1128/MCB.23.5.1808-1816.2003

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  55 in total

Review 1.  Promoter targeting and chromatin remodeling by the SWI/SNF complex.

Authors:  C L Peterson; J L Workman
Journal:  Curr Opin Genet Dev       Date:  2000-04       Impact factor: 5.578

2.  Analysis of promoter binding by the E2F and pRB families in vivo: distinct E2F proteins mediate activation and repression.

Authors:  Y Takahashi; J B Rayman; B D Dynlacht
Journal:  Genes Dev       Date:  2000-04-01       Impact factor: 11.361

3.  Methylation of histone H3 at lysine 4 is highly conserved and correlates with transcriptionally active nuclei in Tetrahymena.

Authors:  B D Strahl; R Ohba; R G Cook; C D Allis
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

Review 4.  RNA polymerase II elongation through chromatin.

Authors:  G Orphanides; D Reinberg
Journal:  Nature       Date:  2000-09-28       Impact factor: 49.962

5.  Ordered recruitment of chromatin modifying and general transcription factors to the IFN-beta promoter.

Authors:  T Agalioti; S Lomvardas; B Parekh; J Yie; T Maniatis; D Thanos
Journal:  Cell       Date:  2000-11-10       Impact factor: 41.582

Review 6.  Orchestrated response: a symphony of transcription factors for gene control.

Authors:  B Lemon; R Tjian
Journal:  Genes Dev       Date:  2000-10-15       Impact factor: 11.361

7.  The PHD type zinc finger is an integral part of the CBP acetyltransferase domain.

Authors:  Eric Kalkhoven; Hans Teunissen; Ada Houweling; C Peter Verrijzer; Alt Zantema
Journal:  Mol Cell Biol       Date:  2002-04       Impact factor: 4.272

8.  Cofactor dynamics and sufficiency in estrogen receptor-regulated transcription.

Authors:  Y Shang; X Hu; J DiRenzo; M A Lazar; M Brown
Journal:  Cell       Date:  2000-12-08       Impact factor: 41.582

9.  Phosphoacetylation of histone H3 on c-fos- and c-jun-associated nucleosomes upon gene activation.

Authors:  A L Clayton; S Rose; M J Barratt; L C Mahadevan
Journal:  EMBO J       Date:  2000-07-17       Impact factor: 11.598

10.  BRG-1 is recruited to estrogen-responsive promoters and cooperates with factors involved in histone acetylation.

Authors:  J DiRenzo; Y Shang; M Phelan; S Sif; M Myers; R Kingston; M Brown
Journal:  Mol Cell Biol       Date:  2000-10       Impact factor: 4.272

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  30 in total

1.  A phosphorylation switch regulates the transcriptional activation of cell cycle regulator p21 by histone deacetylase inhibitors.

Authors:  Elisabeth Simboeck; Anna Sawicka; Gordin Zupkovitz; Silvia Senese; Stefan Winter; Franck Dequiedt; Egon Ogris; Luciano Di Croce; Susanna Chiocca; Christian Seiser
Journal:  J Biol Chem       Date:  2010-10-14       Impact factor: 5.157

2.  Dynamic chromatin boundaries delineate a latency control region of Epstein-Barr virus.

Authors:  Charles M Chau; Paul M Lieberman
Journal:  J Virol       Date:  2004-11       Impact factor: 5.103

3.  Histone dynamics on the interleukin-2 gene in response to T-cell activation.

Authors:  Xinxin Chen; Jun Wang; Donna Woltring; Steve Gerondakis; M Frances Shannon
Journal:  Mol Cell Biol       Date:  2005-04       Impact factor: 4.272

4.  Bypassing the requirements for epigenetic modifications in gene transcription by increasing enhancer strength.

Authors:  George Koutroubas; Menie Merika; Dimitris Thanos
Journal:  Mol Cell Biol       Date:  2007-11-19       Impact factor: 4.272

5.  In vivo analysis of developmentally and evolutionarily dynamic protein-DNA interactions regulating transcription of the Pgk2 gene during mammalian spermatogenesis.

Authors:  Hirotaka Yoshioka; Christopher B Geyer; Jacey L Hornecker; Krishan T Patel; John R McCarrey
Journal:  Mol Cell Biol       Date:  2007-09-17       Impact factor: 4.272

6.  C/EBPbeta induces chromatin opening at a cell-type-specific enhancer.

Authors:  Annette Plachetka; Olesya Chayka; Carola Wilczek; Svitlana Melnik; Constanze Bonifer; Karl-Heinz Klempnauer
Journal:  Mol Cell Biol       Date:  2008-01-14       Impact factor: 4.272

Review 7.  Transcriptional regulation by the Set7 lysine methyltransferase.

Authors:  Samuel T Keating; Assam El-Osta
Journal:  Epigenetics       Date:  2013-03-11       Impact factor: 4.528

8.  Deep sequencing reveals novel Set7 networks.

Authors:  Samuel T Keating; Mark Ziemann; Jun Okabe; Abdul Waheed Khan; Aneta Balcerczyk; Assam El-Osta
Journal:  Cell Mol Life Sci       Date:  2014-05-30       Impact factor: 9.261

9.  Regulation of acetylation at the major histocompatibility complex class II proximal promoter by the 19S proteasomal ATPase Sug1.

Authors:  Olivia I Koues; R Kyle Dudley; Agnieszka D Truax; Dawson Gerhardt; Kavita P Bhat; Sam McNeal; Susanna F Greer
Journal:  Mol Cell Biol       Date:  2008-07-28       Impact factor: 4.272

10.  Distinct methylation patterns in histone H3 at Lys-4 and Lys-9 correlate with up- & down-regulation of genes by ethanol in hepatocytes.

Authors:  Manika Pal-Bhadra; Utpal Bhadra; Daniel E Jackson; Linga Mamatha; Pil-Hoon Park; Shivendra D Shukla
Journal:  Life Sci       Date:  2007-08-16       Impact factor: 5.037

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