Literature DB >> 15798206

Histone dynamics on the interleukin-2 gene in response to T-cell activation.

Xinxin Chen1, Jun Wang, Donna Woltring, Steve Gerondakis, M Frances Shannon.   

Abstract

Several models have been proposed for the mechanism of chromatin remodelling across the promoters of inducible genes in mammalian cells. The most commonly held model is one of cooccupation where histone proteins are modified by acetylation or phosphorylation and nucleosomes are remodelled, allowing the assembly of transcription factor complexes. Using chromatin immunoprecipitation, we observed an apparent decrease of histone acetylation and phosphorylation signals at the proximal promoter region of the inducible interleukin-2 and granulocyte-macrophage colony-stimulating factor genes in response to T-cell activation. We showed that this apparent decrease was due to a loss of histone H3 and H4 proteins corresponding to a decrease in nucleosome occupation of the promoter. This histone loss is reversible; it is dependent on the continual presence of appropriate activating signals and transcription factors and is not dependent on the acetylation status of the histone proteins. These data show for the first time that histone proteins are lost from a mammalian promoter upon activation of transcription and support a model of activation-dependent disassembly and reassembly of nucleosomes.

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Year:  2005        PMID: 15798206      PMCID: PMC1069623          DOI: 10.1128/MCB.25.8.3209-3219.2005

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  48 in total

Review 1.  The in vivo functions of ATP-dependent chromatin-remodelling factors.

Authors:  Toshio Tsukiyama
Journal:  Nat Rev Mol Cell Biol       Date:  2002-06       Impact factor: 94.444

2.  Modifying gene expression programs by altering core promoter chromatin architecture.

Authors:  Stavros Lomvardas; Dimitris Thanos
Journal:  Cell       Date:  2002-07-26       Impact factor: 41.582

3.  Phosphorylation of NF-kappa B p65 by PKA stimulates transcriptional activity by promoting a novel bivalent interaction with the coactivator CBP/p300.

Authors:  H Zhong; R E Voll; S Ghosh
Journal:  Mol Cell       Date:  1998-04       Impact factor: 17.970

4.  DNA instructed displacement of histones H2A and H2B at an inducible promoter.

Authors:  Guillermo P Vicent; A Silvina Nacht; Corey L Smith; Craig L Peterson; Stefan Dimitrov; Miguel Beato
Journal:  Mol Cell       Date:  2004-11-05       Impact factor: 17.970

5.  The phosphorylation status of nuclear NF-kappa B determines its association with CBP/p300 or HDAC-1.

Authors:  Haihong Zhong; Michael J May; Eijiro Jimi; Sankar Ghosh
Journal:  Mol Cell       Date:  2002-03       Impact factor: 17.970

6.  A new regulatory region of the IL-2 locus that confers position-independent transgene expression.

Authors:  M A Yui; G Hernández-Hoyos; E V Rothenberg
Journal:  J Immunol       Date:  2001-02-01       Impact factor: 5.422

7.  Chromatin remodeling of the interleukin-2 gene: distinct alterations in the proximal versus distal enhancer regions.

Authors:  S B Ward; G Hernandez-Hoyos; F Chen; M Waterman; R Reeves; E V Rothenberg
Journal:  Nucleic Acids Res       Date:  1998-06-15       Impact factor: 16.971

Review 8.  Molecular regulation of interleukin-2 expression by CD28 co-stimulation and anergy.

Authors:  J D Powell; J A Ragheb; S Kitagawa-Sakakida; R H Schwartz
Journal:  Immunol Rev       Date:  1998-10       Impact factor: 12.988

Review 9.  A dynamic assembly of diverse transcription factors integrates activation and cell-type information for interleukin 2 gene regulation.

Authors:  E V Rothenberg; S B Ward
Journal:  Proc Natl Acad Sci U S A       Date:  1996-09-03       Impact factor: 11.205

10.  Nuclear factor of activated T cells (NFAT)-dependent transactivation regulated by the coactivators p300/CREB-binding protein (CBP).

Authors:  C García-Rodríguez; A Rao
Journal:  J Exp Med       Date:  1998-06-15       Impact factor: 14.307

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  48 in total

Review 1.  Roles of the NF-kappaB pathway in lymphocyte development and function.

Authors:  Steve Gerondakis; Ulrich Siebenlist
Journal:  Cold Spring Harb Perspect Biol       Date:  2009-12-23       Impact factor: 10.005

2.  Two-step binding of transcription factors causes sequential chromatin structural changes at the activated IL-2 promoter.

Authors:  Satoru Ishihara; Ronald H Schwartz
Journal:  J Immunol       Date:  2011-08-10       Impact factor: 5.422

3.  The endoglycosidase heparanase enters the nucleus of T lymphocytes and modulates H3 methylation at actively transcribed genes via the interplay with key chromatin modifying enzymes.

Authors:  Yi Qing He; Elissa L Sutcliffe; Karen L Bunting; Jasmine Li; Katharine J Goodall; Ivan K A Poon; Mark D Hulett; Craig Freeman; Anjum Zafar; Russell L McInnes; Toshiki Taya; Christopher R Parish; Sudha Rao
Journal:  Transcription       Date:  2012 May-Jun

4.  Dynamic histone variant exchange accompanies gene induction in T cells.

Authors:  Elissa L Sutcliffe; Ian A Parish; Yi Qing He; Torsten Juelich; M Louise Tierney; Danny Rangasamy; Peter J Milburn; Christopher R Parish; David J Tremethick; Sudha Rao
Journal:  Mol Cell Biol       Date:  2009-01-21       Impact factor: 4.272

Review 5.  T-cell identity and epigenetic memory.

Authors:  Ellen V Rothenberg; Jingli A Zhang
Journal:  Curr Top Microbiol Immunol       Date:  2012       Impact factor: 4.291

6.  Dynamic and selective nucleosome repositioning during endotoxin tolerance.

Authors:  Mohamed El Gazzar; Tiefu Liu; Barbara K Yoza; Charles E McCall
Journal:  J Biol Chem       Date:  2009-11-09       Impact factor: 5.157

7.  A new fractionation assay, based on the size of formaldehyde-crosslinked, mildly sheared chromatin, delineates the chromatin structure at promoter regions.

Authors:  Satoru Ishihara; Rajat Varma; Ronald H Schwartz
Journal:  Nucleic Acids Res       Date:  2010-04-05       Impact factor: 16.971

8.  Inducible nucleosome depletion at OREBP-binding-sites by hypertonic stress.

Authors:  Edith H Y Tong; Jin-Jun Guo; Song-Xiao Xu; Keri Mak; Sookja K Chung; Stephen S M Chung; Ali-Long Huang; Ben C B Ko
Journal:  PLoS One       Date:  2009-12-24       Impact factor: 3.240

9.  Defining the chromatin signature of inducible genes in T cells.

Authors:  Pek S Lim; Kristine Hardy; Karen L Bunting; Lina Ma; Kaiman Peng; Xinxin Chen; Mary F Shannon
Journal:  Genome Biol       Date:  2009-10-06       Impact factor: 13.583

10.  Epigenetic inheritance of an inducibly nucleosome-depleted promoter and its associated transcriptional state in the apparent absence of transcriptional activators.

Authors:  Ryosuke Ohsawa; Melissa Adkins; Jessica K Tyler
Journal:  Epigenetics Chromatin       Date:  2009-09-11       Impact factor: 4.954

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